PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_66681g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

bHLH

Protein Properties

Length: 553aa MW: 61665.4 Da PI: 4.7587

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_66681g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.8	4.5e-09	383	425	7	54
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +ErrRR+r+N+++ Lr+++P+ +K++ +iL ++e+ k+L MA_66681g0010 383 LAERRRRKRLNERLCMLRSVVPTI-----TKMDRTSILSDTIEHTKQL 425 58*******************7.....6************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.062	376	425	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-14	379	446	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.4E-10	382	431	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.7E-13	383	437	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.6E-7	383	425	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 553 aa Download sequence Send to blast
MDTSIYDQIF MSRTMAECTW GNSNYGHFDI SEYRVLEEGN GLLALMDSNF LAANSVLNVT 60 EATRSPNTEL VRSQYGNDIF GGCTHNLSDQ AYSCAWNAAY PRDLDENSFR FGHYTSSKCF 120 QTLNWEDRGD GSLGYGAEFQ QNTFGGATAF NSENSNDLNK VQPVDQGNNI CEILREQASQ 180 NELGFICSNV NDIRHVGSDS SKFSVGYFHE NSMKSTIGQP YNGISFNQYD EMEMNGVLLG 240 YNTESAISTL LNEDKTSIEP LEFDGTKGIV TVSVSELDGF DDKTPLSTSY ETEIYSDQQS 300 PQTVGLPLKV SENRVPINTA ASQLVKSDWN REENGGRMDE LFVMNDANGT KVTYTTGEGE 360 SSNAKVVRGG VSKSKGHPAK NLLAERRRRK RLNERLCMLR SVVPTITKMD RTSILSDTIE 420 HTKQLLQQIQ FLHGELQPQA NWPEHLRAYE GYFRSAGMDC DQKFADKHIS KFEVKRTGTR 480 DLNIHMTCQT NPSILLSTIS TLESFGLDIQ QAIISCFSDF GVQAHCSEID KAKSNIRPED 540 IKLALLQTAG YLG

Sequence ? help Back to Top

Protein Sequence Length: 553 aa Download sequence Send to blast

MDTSIYDQIF MSRTMAECTW GNSNYGHFDI SEYRVLEEGN GLLALMDSNF LAANSVLNVT  60
EATRSPNTEL VRSQYGNDIF GGCTHNLSDQ AYSCAWNAAY PRDLDENSFR FGHYTSSKCF  120
QTLNWEDRGD GSLGYGAEFQ QNTFGGATAF NSENSNDLNK VQPVDQGNNI CEILREQASQ  180
NELGFICSNV NDIRHVGSDS SKFSVGYFHE NSMKSTIGQP YNGISFNQYD EMEMNGVLLG  240
YNTESAISTL LNEDKTSIEP LEFDGTKGIV TVSVSELDGF DDKTPLSTSY ETEIYSDQQS  300
PQTVGLPLKV SENRVPINTA ASQLVKSDWN REENGGRMDE LFVMNDANGT KVTYTTGEGE  360
SSNAKVVRGG VSKSKGHPAK NLLAERRRRK RLNERLCMLR SVVPTITKMD RTSILSDTIE  420
HTKQLLQQIQ FLHGELQPQA NWPEHLRAYE GYFRSAGMDC DQKFADKHIS KFEVKRTGTR  480
DLNIHMTCQT NPSILLSTIS TLESFGLDIQ QAIISCFSDF GVQAHCSEID KAKSNIRPED  540
IKLALLQTAG YLG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	384	391	ERRRRKRL

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP557	16	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	1e-25	beta HLH protein 93