PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_66501g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

LBD

Protein Properties

Length: 129aa MW: 14688 Da PI: 8.6963

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_66501g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	122.5	2.1e-38	21	120	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+ rr+C+++C++apyfp+++++++a+vhk+FGa+nv+k++++lp ++r+da++++v eA+ar++dPvyG++g++ +lq +++qlk+++a+ MA_66501g0010 21 PCAACKMRRRRCTEKCPFAPYFPQSRAESYAAVHKIFGANNVMKMVQDLPVDKRSDAIKCMVIEANARLKDPVYGCTGIVCQLQLRVSQLKSQIAK 116 7**********************************************************************************************9 PP DUF260 97 lkee 100 +++ MA_66501g0010 117 TQSD 120 9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.236	20	121	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-38	21	118	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MQSHNRDEEE EGERHNVLIS PCAACKMRRR RCTEKCPFAP YFPQSRAESY AAVHKIFGAN 60 NVMKMVQDLP VDKRSDAIKC MVIEANARLK DPVYGCTGIV CQLQLRVSQL KSQIAKTQSD 120 IQSIVRIFD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-31	20	121	10	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-31	20	121	10	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008783779.1	6e-43	LOB domain-containing protein 1-like
Swissprot	Q8LBW3	6e-39	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A022RH94	1e-41	A0A022RH94_ERYGU; Uncharacterized protein
STRING	Migut.F02029.1.p	2e-42	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	3e-41	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]