PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_66442g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 437aa MW: 48723 Da PI: 5.9487 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.3 | 1.9e-18 | 62 | 111 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr+++ +gr++AeIrdp++ + r++lg+f+taeeAa a+++a+++++g MA_66442g0010 62 RYLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAEEAAMAYDRAARSIRG 111 588******.**********965...5***********************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.3E-28 | 62 | 119 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-20 | 62 | 119 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.246 | 62 | 119 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-33 | 62 | 125 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.02E-29 | 62 | 118 | No hit | No description |
PRINTS | PR00367 | 2.0E-8 | 63 | 74 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.4E-11 | 63 | 111 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-8 | 85 | 101 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
MASSEHNILV SDNDRFPADS SMMSQSSSSA LAPHVSSATR RSSSSSSSPE RKFKRKQQEP 60 GRYLGVRRRP WGRYAAEIRD PTTKERHWLG TFDTAEEAAM AYDRAARSIR GIKARTNFMY 120 ADMPQGASLT NDMSPEEIER LRNLLLASRM NWTDQQQQAQ PEQVHYNIEE HSRVLHDSSC 180 SIPFNIGSLN PSQFMSMPCN ISEQSKPAMT PNFEAEKALP MQSDTAWTMA NLLDSFPRQV 240 PINNYSNHQL QQSSALALSS IHVPNYSLFS APQDQIPAPI STNIDRNNFH RQIYIPDHLL 300 SPAHNLKSQS LVDAFSTPSS EVCSPDRRIT LPSIEPVSAP ASEVCSPANH VQTNPNSVHS 360 AFPSLYEVSQ GLWVDSNQQP NFADWEGQHC ESPVSCPGIN YDIELNSTML HSPLFGFMPQ 420 VSDSSIHDVF DLGSSQL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-20 | 59 | 118 | 11 | 71 | Ethylene-responsive transcription factor ERF096 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00163 | DAP | Transfer from AT1G28160 | Download |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28160.1 | 3e-30 | ERF family protein |