PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_66255g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 448aa MW: 49603.8 Da PI: 7.1832 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.2 | 9.5e-19 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d+++++G g+W++ +++ g+ R++k+c++rw +yl MA_66255g0010 15 KGPWTPEEDQKLIDYIQRHGHGSWRALPKRAGLLRCGKSCRLRWTNYL 62 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53.5 | 5.7e-17 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ eE++ ++++++ lG++ W+tIa +++ gRt++++k++w+++l MA_66255g0010 68 RGQFSFEEEQTIIELHAVLGNK-WSTIAGHLP-GRTDNEIKNYWNTHL 113 899*******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-24 | 7 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.344 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.57E-31 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-15 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-17 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.95E-12 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 25.736 | 63 | 117 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.6E-27 | 66 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-15 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.35E-11 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MGRTPCCEKN IGLKKGPWTP EEDQKLIDYI QRHGHGSWRA LPKRAGLLRC GKSCRLRWTN 60 YLRPDIKRGQ FSFEEEQTII ELHAVLGNKW STIAGHLPGR TDNEIKNYWN THLKKRLLQM 120 GIDPVTHRPR TDLLAFPNIQ SSIFNTSGLG HMAQWENARL EAEARLTGEY LRQALFMAGN 180 GSATADLFTR PCKSEFGDDQ FNLTKNMANP PWLQQPGIAL DYKGAVPQSL EQFLQTNVCS 240 APDINGGGCL SHESGFNIAR FASPCSTLDG IQIKTEPQSL CGPQVVKNDH QFLHSEGDLP 300 KQAMLDMNVG SNILCNINAE SKVSFGHDGI ITDQDYNNLC QIDNNHSCNN HLSHAATTLW 360 PVEGQLQAIG SDSMPGLISS TSSTSNNIYS QPGLIPFLNA TTSSMGNTNS YREAQPEQNQ 420 DQAAKQYWST MLKAVGTIPA SHIISARQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-30 | 13 | 117 | 5 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A222UAA7 | 1e-147 | A0A222UAA7_GINBI; R2R3MYB6 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15310.1 | 6e-86 | myb domain protein 16 |