PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_66255g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 448aa    MW: 49603.8 Da    PI: 7.1832
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_66255g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.29.5e-191562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+d+++++G g+W++ +++ g+ R++k+c++rw +yl
    MA_66255g0010 15 KGPWTPEEDQKLIDYIQRHGHGSWRALPKRAGLLRCGKSCRLRWTNYL 62
                     79******************************99************97 PP

2Myb_DNA-binding53.55.7e-1768113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++ eE++ ++++++ lG++ W+tIa +++ gRt++++k++w+++l
    MA_66255g0010  68 RGQFSFEEEQTIIELHAVLGNK-WSTIAGHLP-GRTDNEIKNYWNTHL 113
                      899*******************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-24765IPR009057Homeodomain-like
PROSITE profilePS5129417.3441062IPR017930Myb domain
SuperFamilySSF466892.57E-3112109IPR009057Homeodomain-like
SMARTSM007174.1E-151464IPR001005SANT/Myb domain
PfamPF002491.5E-171562IPR001005SANT/Myb domain
CDDcd001671.95E-121762No hitNo description
PROSITE profilePS5129425.73663117IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.6E-2766117IPR009057Homeodomain-like
SMARTSM007172.2E-1567115IPR001005SANT/Myb domain
PfamPF002493.5E-1568113IPR001005SANT/Myb domain
CDDcd001671.35E-1171113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MGRTPCCEKN IGLKKGPWTP EEDQKLIDYI QRHGHGSWRA LPKRAGLLRC GKSCRLRWTN  60
YLRPDIKRGQ FSFEEEQTII ELHAVLGNKW STIAGHLPGR TDNEIKNYWN THLKKRLLQM  120
GIDPVTHRPR TDLLAFPNIQ SSIFNTSGLG HMAQWENARL EAEARLTGEY LRQALFMAGN  180
GSATADLFTR PCKSEFGDDQ FNLTKNMANP PWLQQPGIAL DYKGAVPQSL EQFLQTNVCS  240
APDINGGGCL SHESGFNIAR FASPCSTLDG IQIKTEPQSL CGPQVVKNDH QFLHSEGDLP  300
KQAMLDMNVG SNILCNINAE SKVSFGHDGI ITDQDYNNLC QIDNNHSCNN HLSHAATTLW  360
PVEGQLQAIG SDSMPGLISS TSSTSNNIYS QPGLIPFLNA TTSSMGNTNS YREAQPEQNQ  420
DQAAKQYWST MLKAVGTIPA SHIISARQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-30131175108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A222UAA71e-147A0A222UAA7_GINBI; R2R3MYB6
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.16e-86myb domain protein 16