PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_65818g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 343aa    MW: 37320.8 Da    PI: 7.9926
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_65818g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.82.2e-14177223354
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++++L
  MA_65818g0010 177 KSHSEAERRRRERINNHLATLRSLLPNT-----TKTDKASLLAEVIDHVREL 223
                    79*************************9.....8***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.288174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-15177227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-12177223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-15178232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-15180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.73E-6187227No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MERCFAAGTD ESGVWIAVIP WGREGLNICK RETRKKMQQD EQARSSMNAR RADQDSKMLF  60
PTWPTIAVPS HNVGQGHLEP FQTQVIPGRD QILAAMASEG GSSSSNSFSG FQDLINGGAP  120
LQFSYDYLGG HMLQVPAGLA NYFPTIIVAA TCCRSALEMS KMTAQEIVEA KALAASKSHS  180
EAERRRRERI NNHLATLRSL LPNTTKTDKA SLLAEVIDHV RELKRMVDDI GQASPVPSEA  240
DEITPAPRSQ GGDRNPRQQG EERVSRDQRW LPGSQREIAT LGSRVKNVLV VTSGGSQDPN  300
DVSETPSASS IQEALKAVME RQNSGDLSPA TSSGGNKRQR QVG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182187ERRRRE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1012021e-145BT101202.1 Picea glauca clone GQ0072_L17 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9S7Y11e-39BH030_ARATH; Transcription factor bHLH30
STRINGAquca_002_01095.16e-43(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.15e-35bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]