PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_65190g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 301aa MW: 33375.8 Da PI: 8.0335 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.3 | 3.8e-18 | 86 | 135 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d + ++ r +lg+f taeeAa+a+++a+ l+g MA_65190g0010 86 RFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 135 789******.7*********32...35**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.44E-32 | 85 | 142 | No hit | No description |
SuperFamily | SSF54171 | 5.3E-19 | 86 | 143 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.1E-36 | 86 | 149 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.2E-13 | 86 | 135 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-27 | 86 | 142 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.585 | 86 | 143 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-7 | 87 | 98 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-7 | 109 | 125 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000302 | Biological Process | response to reactive oxygen species | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0035865 | Biological Process | cellular response to potassium ion | ||||
GO:0048528 | Biological Process | post-embryonic root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MSASDGSSIT HPYSLRSANS SNKPEDCAPP AQLPAMAVQP SANTNHVNSN SNNLHASFNC 60 PINTGFDQSS RAMQAMMRTS NSRRKRFVGV RQRPSGRWVA EIKDTTQKIR MWLGTFETAE 120 EAARAYDEAA CLLRGSNTRT NFVPTVNSCK NSALASRINR LLSLRKDSIA SANSKSIIKE 180 DCKDRHDNNH NASFKSSSNY VSEDTNEDSL PIQQSPSCTF SLCNYVCSSS SHALDGDMDQ 240 PPQRQQDVEK QPRLSHDIHA NHSQISYHIK SSSSVMEEEI VNQPRSVLTP DLSRAEKDHF 300 I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-15 | 82 | 148 | 1 | 68 | ATERF1 |
3gcc_A | 2e-15 | 82 | 148 | 1 | 68 | ATERF1 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00521 | DAP | Transfer from AT5G19790 | Download |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 7e-25 | related to AP2 11 |