PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_6394g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 869aa    MW: 94890.9 Da    PI: 6.3651
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_6394g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.87.7e-08500521527
                   --SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                   lCr++a+ G+C +G++C+F+H++
  MA_6394g0010 500 LCRYHAQ-GFCGRGESCPFSHSQ 521
                   8**9999.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.051495522IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-4496521IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5499520IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4500522IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-5500521IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:1.25.10.102.2E-51625822IPR011989Armadillo-like helical
PROSITE profilePS5030337.762626869IPR033133Pumilio homology domain
SuperFamilySSF483718.25E-48650841IPR016024Armadillo-type fold
SMARTSM000250.001653688IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503028.477653688IPR001313Pumilio RNA-binding repeat
PfamPF008061.9E-4657687IPR001313Pumilio RNA-binding repeat
SMARTSM000255.9E-11689724IPR001313Pumilio RNA-binding repeat
PfamPF008062.1E-11689723IPR001313Pumilio RNA-binding repeat
PROSITE profilePS5030213.05689724IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503028.897725763IPR001313Pumilio RNA-binding repeat
SMARTSM0002514728763IPR001313Pumilio RNA-binding repeat
PfamPF008064.7E-5731759IPR001313Pumilio RNA-binding repeat
SMARTSM000250.039765801IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503027.404765801IPR001313Pumilio RNA-binding repeat
PfamPF008065.9E-6767794IPR001313Pumilio RNA-binding repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 869 aa     Download sequence    Send to blast
MASPTGFANF MVMDRTADLG FVDDEEFEML LGEIPSATAA PPHLEEVQRT DESPKGEGVL  60
LQQNARKSST PETYDNFYQD YQGVKNLSAS PGGTIVSVSP MSSNCFPAFY GGLSFNGSAS  120
GSSLQLQPEQ QHTKVQAMVH TETITEQGQL QSNVSIHHNG IALPTKQIFV DNQALTTAFG  180
NLNFKEDKVL SQGIQASGQP GDGRYGSPVL VNGQAPIIAA KVYSHFDVAA TSVPGQLNGV  240
GSLNSMGSPS NTSLSNVHGI RYPSQHKNLS GFFQAAGNDM SNPAMRKLLK YNGYGTNTHG  300
NNLGLPLDGL NVESYDPQRL IPLYSTAAAP APEMPGFHIL PSASISRAEV LSPISGLQQQ  360
YYMDTHIGSF LQPQPQQCGP PVPALQSQIN RMHLMWQHIE EERYRRMHQQ YMLQHVQTQA  420
RGSMPNQAAA GIMGGSLDQS FRQQVVQPSM TISQPEQPLY KHQQQGLPAV EGDWSASLIP  480
GTAGASAINF SDFPLQSGNL CRYHAQGFCG RGESCPFSHS QAQMVASGRI SAPGNILTKD  540
PSGVTILNGE EKPVFPEKIL TRNRSRGVNT VRTINLSPAG GRKDSLSNGN GSGRVLSDGH  600
HSSALRVGSF QLDNQGHHRE LSPENVDFEL IPRTLSSSQQ QQLLLPKYTS LDEVEGRIYC  660
IARDQHGCRF LQKKFDEGRP EDVQKIFVEI IDHIIELMTD PFGNYLVQKL LEVCNEDQRM  720
QILHAITGKP GELVNISLNM HGTRAVQKLI ETLETPQQVS MVTSSLILGV VTLIKDLNGN  780
HVVQRCLQCL GNEDSQEASL HFGEYSHNCR STLVRTAVGQ FVLKSWEQLM STVLQSVFSV  840
FWVGLSDELL LFLLGALSLE RGAPPLFGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3bx3_A3e-336518108171Protein PUF4
3bx3_B3e-336518108171Protein PUF4
4dzs_A3e-3365180930192Pumilio homology domain family member 4
4dzs_B3e-3365180930192Pumilio homology domain family member 4
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1053610.0BT105361.1 Picea glauca clone GQ02821_H08 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP82856