PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_6393g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 431aa    MW: 48434.9 Da    PI: 6.5045
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_6393g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72.1e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l++++ ++G+g +W + ++++g++R++k+c++rw++yl
     MA_6393g0010 14 KGPWSPEEDSKLKEYIDKYGTGgNWIALPQKVGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding38.23.2e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEd ++ ++    G++ W+ Ia+ ++ gRt++++k++w++
     MA_6393g0010  69 GGFSEEEDNIICNLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.336962IPR017930Myb domain
SuperFamilySSF466897.99E-2711109IPR009057Homeodomain-like
SMARTSM007174.7E-131364IPR001005SANT/Myb domain
PfamPF002491.1E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-241569IPR009057Homeodomain-like
CDDcd001677.42E-101662No hitNo description
PROSITE profilePS5129421.7763117IPR017930Myb domain
SMARTSM007172.7E-1167115IPR001005SANT/Myb domain
PfamPF002491.1E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-2370117IPR009057Homeodomain-like
CDDcd001673.36E-871111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDSKLKEYID KYGTGGNWIA LPQKVGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC NLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
RKDHQTRRLA AAKQERKDLQ NYATPEANTS AHIYGLQQQP GGLDHHMSIN MNGPYSNFSP  180
RLISQLFEQN CGPTITESSS SSEPATFQLN PQQVLDQEVS DRNSCLRKLL QRFEGTMVDH  240
RSNNCMTMMG TNAQIQASNC INASEIQHST AHIQYNSDAA SQISYETSAS PFMYARHMEN  300
HIKLENPSAA LIQNDNSLVF SASSSPEEGN YEPAWMNTTF NAENNNLGGY GFPTELNDIL  360
LYNNDSVEQQ REACNYASAS VNTMDTSAWT QHADLRSSTS SCPSINYPDL LPSQHSLQQE  420
ILFQEGPIFE L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-26141177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5ABB61e-172D5ABB6_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.18e-77myb domain protein 36