PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_63523g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

LBD

Protein Properties

Length: 277aa MW: 30317 Da PI: 8.4883

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_63523g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	101	1.1e-31	19	120	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C++C+vlr++C+++C+l++ + p++q++++ +v+k+FG++ ++ ++++++e er+d+++sl+yeA+ r+ +Pv+Gavg+++++++q++q++ MA_63523g0010 19 SCNGCRVLRKGCSDNCILRQSLqwiesPQSQAHATVFVAKFFGRAGLMTFIATVSEPERPDLFKSLLYEACGRTVNPVHGAVGLMWTGKWQICQAA 114 6*********************************************************************************************** PP DUF260 92 aelall 97 ++++l MA_63523g0010 115 VQTVLS 120 998775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.985	18	124	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-26	19	118	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MSATDKNITE RKEQQRKMSC NGCRVLRKGC SDNCILRQSL QWIESPQSQA HATVFVAKFF 60 GRAGLMTFIA TVSEPERPDL FKSLLYEACG RTVNPVHGAV GLMWTGKWQI CQAAVQTVLS 120 GGSLDRTPAS PWFPLTDANG DRNRMSAGDP WPNETDVGNY PGDDDVCKIY ELGACVDSRR 180 VRQKIDGSNN NNNEIASTDA DKLGQRGSGI DGQKNDIKLD LSLNCSSKSK SSNLKQQRVS 240 SPSTNSVHSE GSVNRLKISN PLPSSTMASQ QKFLDLL

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ262519	2e-87	JQ262519.1 Pinus radiata isolate 2166 hypothetical protein (2_2916_01) gene, 3' UTR.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D6QX50	6e-93	A0A0D6QX50_ARACU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP403	16	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	5e-61	LOB domain-containing protein 38