PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_6326342g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 123aa    MW: 13525.7 Da    PI: 4.7312
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_6326342g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.62.8e-08448244
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     g W+ e  + +  a +++  +   +W++Ia+ ++ g+++ ++k ++
  MA_6326342g0010  4 GDWSREQNKAFEMALAKHLEDtddRWEKIASAVP-GKSPAEVKRHY 48
                     78*****************99*************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.719156IPR017884SANT domain
SMARTSM007172.5E-8254IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-11459IPR009057Homeodomain-like
PfamPF002491.7E-6448IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-5558IPR009057Homeodomain-like
CDDcd001674.63E-7648No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MSNGDWSREQ NKAFEMALAK HLEDTDDRWE KIASAVPGKS PAEVKRHYEI LVEDIASIEA  60
GRVPIPSYLD EVAEQADDGT AKKGGTHSSA YANLPSESNG TGKGTSKSDQ ERRKGIPWTE  120
EEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-226681173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1163430.0BT116343.1 Picea glauca clone GQ03716_N24 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010249027.16e-38PREDICTED: transcription factor DIVARICATA-like isoform X1
RefseqXP_010249034.16e-38PREDICTED: transcription factor DIVARICATA-like isoform X1
RefseqXP_010249041.16e-38PREDICTED: transcription factor DIVARICATA-like isoform X1
RefseqXP_010249048.16e-38PREDICTED: transcription factor DIVARICATA-like isoform X1
RefseqXP_019052501.14e-38PREDICTED: transcription factor DIVARICATA-like isoform X2
RefseqXP_027099997.16e-39transcription factor SRM1-like
SwissprotQ9FNN62e-30SRM1_ARATH; Transcription factor SRM1
TrEMBLB8LKB71e-83B8LKB7_PICSI; Uncharacterized protein
STRINGERN093733e-38(Amborella trichopoda)
STRINGXP_010249027.12e-37(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.19e-33MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]