PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_6305g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 147aa MW: 16663.2 Da PI: 10.4606 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.5 | 5.9e-17 | 38 | 87 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++G+r +k +g+Wv+eIr p++ + r++lg+++t+e+Aa+a++ a +l+g MA_6305g0010 38 EIRGIRMRK-WGKWVSEIRMPNS---KGRIWLGSYDTPEKAARAYDFAVYCLRG 87 68*****99.**********832...49********************999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.3E-5 | 23 | 40 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.33E-27 | 37 | 97 | No hit | No description |
PROSITE profile | PS51032 | 21.246 | 38 | 95 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-32 | 38 | 101 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.9E-10 | 38 | 87 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-20 | 38 | 97 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.4E-8 | 39 | 50 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-28 | 41 | 96 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-8 | 61 | 77 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MAKPSPYQNG HGRSENHSLK LPHFMGIRMR KWGKWVSEIR GIRMRKWGKW VSEIRMPNSK 60 GRIWLGSYDT PEKAARAYDF AVYCLRGSKA KINFPYSPPE FPCASSLSPP QIQAGAAKFA 120 AEDFCLPLEK DAPSSSTIYL FGSVIRH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-15 | 40 | 97 | 16 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010261769.1 | 2e-37 | PREDICTED: ethylene-responsive transcription factor ERF017-like | ||||
Swissprot | Q9C591 | 1e-35 | ERF16_ARATH; Ethylene-responsive transcription factor ERF016 | ||||
TrEMBL | B8LPP6 | 2e-50 | B8LPP6_PICSI; Uncharacterized protein | ||||
STRING | XP_010261769.1 | 6e-37 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G21960.1 | 6e-38 | ERF family protein |