PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_6285g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 370aa MW: 41758.5 Da PI: 5.1789 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.3 | 5.7e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++lv++++ G g+W++ ++ g+ R++k+c++rw +yl MA_6285g0010 14 KGTWSPEEDKILVNYIENNGHGSWRALPKLAGLLRCGKSCRLRWSNYL 61 799*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 46.9 | 6.2e-15 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T eE+ ++++++ lG++ W+ Ia+ ++ +Rt++++k++w++ MA_6285g0010 67 RGSFTREEERTIIQLHAILGNR-WSIIASQLP-RRTDNEIKNFWNTN 111 899*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.181 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.24E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.00E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.334 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.9E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.7E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.59E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MGRAPCYEKT GLKKGTWSPE EDKILVNYIE NNGHGSWRAL PKLAGLLRCG KSCRLRWSNY 60 LRPDIKRGSF TREEERTIIQ LHAILGNRWS IIASQLPRRT DNEIKNFWNT NLKKRLLKMG 120 LDPSTHAPKE EAKPTAPHGY EALALTRHKT QWENARLEAE ARLSRESLIM SFDSATPIKS 180 TVEIITIPND NPPADYFLKL WNSEIGKAFR NENHHPNGGN DPVFSSEVPL SSVSNMCCAS 240 TQHSCDQSLN PNDEDKDNGS QQCNSSSFEW IGDCNVKTPE ELSCFPGMAL GQTEDKVAEE 300 LGPAQIVHYI GFPELLLDFP DNDDKNNNTN SFQSELSTAF QQQSASPWPE LHDEEYWSNM 360 SFIDQASADT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-25 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022859765.1 | 5e-93 | transcription factor MYB41-like | ||||
Swissprot | Q9M2D9 | 2e-89 | MYB17_ARATH; Transcription factor MYB17 | ||||
TrEMBL | A0A222UAM7 | 1e-115 | A0A222UAM7_GINBI; R2R3MYB15 | ||||
STRING | EOX96013 | 2e-91 | (Theobroma cacao) | ||||
STRING | XP_010255443.1 | 1e-91 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61250.1 | 1e-91 | myb domain protein 17 |