PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_6177g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family WRKY
Protein Properties Length: 572aa    MW: 63238.2 Da    PI: 7.4391
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_6177g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.42.5e-27187247259
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                   +Dgy+WrKYGqK++ g+++prsYYrCt++   gC+++kkv+r +++p+v+e+tY+g H ++
  MA_6177g0010 187 EDGYTWRKYGQKDILGAQHPRSYYRCTHKhdlGCQATKKVQRPDDNPSVFEVTYSGVHSCQ 247
                   7***************************99999*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-26184247IPR003657WRKY domain
SuperFamilySSF1182903.4E-24185247IPR003657WRKY domain
SMARTSM007748.3E-38186248IPR003657WRKY domain
PfamPF031062.5E-26187247IPR003657WRKY domain
PROSITE profilePS5081120.702187249IPR003657WRKY domain
PROSITE profilePS501749.467481526IPR000467G-patch domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MADSMDVRDL DECLKEVNHG CQMARELETK LNSAKGPDLY ELLWASSAEI VTTFSHAMEM  60
LGSNSSPNCL DNWQEELKVL LEKQLGGLAV GHSPKKSVKD NRNSSPRSGG RSSLSGSPPS  120
DMSEGSPVRS LATPGKLKRN DPTDTSENER ASSKERRGIS RKRKSLPKWT RIMPANSSEP  180
GNDIPPEDGY TWRKYGQKDI LGAQHPRSYY RCTHKHDLGC QATKKVQRPD DNPSVFEVTY  240
SGVHSCQSDG RLLQLPFPIS QIQGNIAIFP PTHFLSSSST PWFAAHDGGV CPVKSESLDS  300
FGKSPSYSPN MDSSAHSAMP FTSPAGDQIY RLQGSEKEIS ADFIPHHQQN EYPSTFLGGE  360
LEFPSFAPFF CSPSTSESNY MPPPTPLMQS MDTCRQRLQA SESDITEVVS THNSATDSPM  420
LEMDHFPTMF TMAVGRLPGR FYISLRRFVS LSRFLIAWAE ITSPWVDSSF PGRLSFPAGC  480
TQLCGGRTRL HMGYDGQGLR KRSQGILSPI VAEQMAKHEG LGFDGRMEKT MTMKIIFVKA  540
KDMSKLDFSS GEGQQQLVKV ASHHHLNLLV AN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-20187247969OsWRKY45
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159164SRKRKS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1162530.0BT116253.1 Picea glauca clone GQ03714_K22 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.29e-30WRKY family protein