PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_616354g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 360aa    MW: 39951.5 Da    PI: 7.8701
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_616354g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.2e-11157201554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     h + ErrRR++++++fe Lr+l+P+       + +K++iL  + eY+ sL
  MA_616354g0010 157 HMISERRRREKMKESFEALRSLIPPG-----SRKDKVSILSYTGEYLTSL 201
                     7899********************95.....48899**********9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.665152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.63E-10154202No hitNo description
SuperFamilySSF474591.06E-15155224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-8157201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-15157222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.9E-9158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MVSYVQYPTK TPDDQINIPQ DTPQYSTSAS DLASGFYPYL QSFQLPSSSG LLISDHDHET  60
TLVSTQQISV PALLITPQTS QASDFPVVPP ERSMMPSAFG MWRLPSKVLT LPMVGQYRLK  120
RCLAILRNIH AERVRQTSIS GSYRPPGGTI SNGQVLHMIS ERRRREKMKE SFEALRSLIP  180
PGSRKDKVSI LSYTGEYLTS LKYRAKELEE RNKQLESELK RFTRAQSQEG AGTSTVLQQQ  240
GSTSTACGDS VVTVEVSKIG GSSTVTTCDE MGLVVVVEKP TNTIDLMIAL LKSLREMGVP  300
LISMDTSTAR HENDPSRLQF RMSATIKLQD EVRNIENHSV SSHCHSHSLC VNICDLVENL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160165ERRRRE
2161166RRRREK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-10bHLH family protein