PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_60543g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HD-ZIP
Protein Properties Length: 386aa    MW: 43414.1 Da    PI: 6.4461
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_60543g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox603.9e-19183236356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    k+++++ +q++ Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  MA_60543g0010 183 KKRRLSVQQVRSLETSFETESKLEPERKMQLAAELGLQPRQVAVWFQNRRARWK 236
                    56789************************************************9 PP
2HD-ZIP_I/II127.84.7e-41183273292
    HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                    kkrrls +qv++LE+sFe+e+kLeperK++la eLglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++y+++++e+++Le +v++L++e+ 
  MA_60543g0010 183 KKRRLSVQQVRSLETSFETESKLEPERKMQLAAELGLQPRQVAVWFQNRRARWKTKQLERDYDDLKQQYEEVVAEKKKLEGQVARLTQEVV 273
                    9**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.7E-19174240IPR009057Homeodomain-like
PROSITE profilePS5007116.892178238IPR001356Homeobox domain
SMARTSM003896.0E-17181242IPR001356Homeobox domain
PfamPF000462.2E-16183236IPR001356Homeobox domain
CDDcd000861.76E-15183239No hitNo description
Gene3DG3DSA:1.10.10.602.0E-19185245IPR009057Homeodomain-like
PRINTSPR000316.0E-6209218IPR000047Helix-turn-helix motif
PROSITE patternPS000270213236IPR017970Homeobox, conserved site
PRINTSPR000316.0E-6218234IPR000047Helix-turn-helix motif
PfamPF021831.2E-6238270IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MWRARGWRHR GRVGPAGEAI SYSQISPHAS PTNRERVVGT HVASVKAIVG VECGNGAVGQ  60
ASGLDLLLYF YQRNAQESLK PEKKQNKAIE EGYKFDGGLR NRGGFALIYT ISMSFNFGSG  120
NDHAVNGFLH LQSGLFSRRF HANGYGHRSG SGFYGSVLYD NPSSSDEVGL CDDEEISGGL  180
HSKKRRLSVQ QVRSLETSFE TESKLEPERK MQLAAELGLQ PRQVAVWFQN RRARWKTKQL  240
ERDYDDLKQQ YEEVVAEKKK LEGQVARLTQ EVVAAKGEKR DQNTLITAKS EEENGLQKTT  300
TTTTEEMQST SPSFCSDADS NRKLLLSSPS CNIQAAACKT DEENEEENLQ ALYSNDFHDQ  360
LDMYRYLMAA EEQQHHGPDW LNFENL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230238RRARWKTKQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0706840.0BT070684.1 Picea sitchensis clone WS02743_M23 unknown mRNA.
GenBankEF0864680.0EF086468.1 Picea sitchensis clone WS02746_E10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NYL70.0A9NYL7_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.11e-36homeobox 3