PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_5979847g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 207aa MW: 22490.1 Da PI: 6.3584 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.6 | 6.4e-18 | 4 | 54 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+++AeIrd + + r++lg+f t eeAa a+++a+ +++g MA_5979847g0010 4 HYRGVRKRP-WGKYAAEIRDSTR---HgVRVWLGTFETGEEAAMAYDQAAFAMRG 54 8********.**********422...25*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.3E-31 | 3 | 63 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.83E-29 | 3 | 62 | No hit | No description |
PROSITE profile | PS51032 | 23.051 | 4 | 62 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-22 | 4 | 64 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.9E-14 | 4 | 54 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.4E-37 | 4 | 68 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.7E-11 | 5 | 16 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.7E-11 | 28 | 44 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
GEKHYRGVRK RPWGKYAAEI RDSTRHGVRV WLGTFETGEE AAMAYDQAAF AMRGSNAILN 60 FPLEVVCSSF KRRQVLPASS VKFSAGGSSE ISSGVTTSGT QLSDCHSRIQ PLDEYHSSTA 120 TSAPERPAAI GLDSCRKRRR PAPSPADKLT TNISDESQNV DKSSGVLLIA EPKSAETHSI 180 LELEALGVDY LEELLLSSQE EASCFLI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-31 | 3 | 65 | 4 | 66 | ATERF1 |
3gcc_A | 6e-31 | 3 | 65 | 4 | 66 | ATERF1 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 139 | RKRRR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00286 | DAP | Transfer from AT2G31230 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ071192 | 1e-69 | FJ071192.2 Pinus taeda isolate 1655 anonymous locus 0_3648_01 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | GLYMA15G08560.1 | 9e-36 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 1e-25 | ethylene response factor 1 |