PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_57970g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

bHLH

Protein Properties

Length: 217aa MW: 24972.4 Da PI: 8.33

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_57970g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.4	4.4e-07	1	38	16	55
HHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +++ f++Lr+llP+ + +K s ++ Av+YI++Lq MA_57970g0010 1 MKTLFSRLRSLLPEeN---LRGKRSESDQMLGAVNYICHLQ 38 6789********66...9******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	3.0E-5	1	55	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.01E-4	1	40	No hit	No description
SuperFamily	SSF47459	3.93E-8	1	54	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MKTLFSRLRS LLPEENLRGK RSESDQMLGA VNYICHLQQK MEDLSRERNR MKASLDRKEK 60 SYFVGMQFSS NDKFCGKHPR LQGSDGKIPS VKINSTLSGV KISLNAFQDR IVYSDLLMAL 120 EESGLEVLNV TSSSVNNTVF HTIHNKVFSH ARGKTKMPSL PYQNLNIHMS TLLQVCDTHY 180 FDMDDLYEKL WHFISDSQAD LGLWKDETNV RCRTSED

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1638	8	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25400.1	6e-18	bHLH family protein