PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_5730259g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 182aa MW: 19956.2 Da PI: 10.0746 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.8 | 2.3e-17 | 86 | 137 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr + +g+++AeIrdp + k +r++lg+f taeeAa a+++a+ +++g+ MA_5730259g0010 86 HYRGVRKRA-WGKFAAEIRDPAK--KGARVWLGTFITAEEAALAYDRAAFRIRGA 137 7*****887.**********954..34*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.9E-30 | 85 | 144 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-21 | 86 | 145 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.2E-34 | 86 | 150 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.69E-27 | 86 | 144 | No hit | No description |
Pfam | PF00847 | 4.3E-11 | 86 | 136 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.709 | 86 | 144 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-10 | 87 | 98 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-10 | 110 | 126 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
SLSFSPTVTW DYIHATITAT ATASGSCLNT ATATASGSEH NENEFTQQHS SSSSVSTVTR 60 REKAVDVKVK PLPREEENGE MRKDRHYRGV RKRAWGKFAA EIRDPAKKGA RVWLGTFITA 120 EEAALAYDRA AFRIRGARAL LNFPLAFASN SENGSAVGQR EKRGREEMAE ECRKSCVGGS 180 RS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-33 | 83 | 145 | 2 | 64 | ATERF1 |
3gcc_A | 2e-33 | 83 | 145 | 2 | 64 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012090506.1 | 1e-34 | ethylene-responsive transcription factor 2 | ||||
TrEMBL | A9NMA3 | 4e-50 | A9NMA3_PICSI; Uncharacterized protein | ||||
STRING | XP_008809462.1 | 7e-34 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47220.1 | 5e-25 | ethylene responsive element binding factor 2 |