PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_57244g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 476aa    MW: 52794.1 Da    PI: 5.2069
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_57244g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.5e-12258309155
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +r++h ++Er+RR+++N+ +  Lr+l+P +   + ++ + a+i   A+e++++L+
  MA_57244g0010 258 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 309
                    79****************************...9*****************9995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.31E-13256313No hitNo description
Gene3DG3DSA:4.10.280.101.8E-13256312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-16257323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.428257308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-9258309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-9263314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010377Biological Processguard cell fate commitment
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051782Biological Processnegative regulation of cell division
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MVNFRFLNPM EKEEGSSVPT MFPPACTEYS LDQLQLGKPS RTTDCIENLD NNSMGSGILD  60
MFNIHHISSG SSVGCSTALE KMSFADVMQF ADYGSKVALS QAMDDESEAT GRSGPENSFD  120
PVYFLKFPVL AADHQKPIDH KNLDQSIHEV QITLATESDG NYHTAGNSGS EHLERGNDIP  180
AYENTSNLNH ELNLSTDAAN STMKIGHSCD EQQQILSLDT PKIGSFSTSN CSPDQPPQCK  240
PKRKRSRACK NSEEVESQRM THIAVERNRR KQMNEHLRVL RSLMPGSYVQ RGDQASIIGG  300
AIEFVRELEQ LLQCLESQKR RRLYAEASSS LVSGARQPQT DHAAGCLPIQ TSYPVFSVQP  360
DFKYLDGNLY NEPIREDIAE NKSPVADIEV KLVGYDAMIK ILSQRRPGQL LKTIAALENL  420
QFNIMHTNIT TIEQTVLYSF NVKVGGDCGL SAEDIANSVH QIFNMIHASC MGYIND
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1258269RMTHIAVERNRR
2318322KRRRL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1059190.0BT105919.1 Picea glauca clone GQ02830_B17 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020534623.11e-118transcription factor FAMA isoform X2
RefseqXP_020534624.11e-118transcription factor FAMA isoform X2
STRINGPOPTR_0001s32160.11e-115(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.15e-99bHLH family protein