PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_5629699g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 189aa MW: 21120.6 Da PI: 7.5116 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.3 | 1.7e-17 | 26 | 75 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr++ +g+WvAeIr + r++lg++ tae+Aa+a++aa +l+g MA_5629699g0010 26 RFRGVRRRT-WGKWVAEIRMlR-----CrSRVWLGSYRTAEQAARAYDAASFCLRG 75 69****877.**********76.....56*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.8E-12 | 26 | 75 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-28 | 26 | 85 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-33 | 26 | 89 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.957 | 26 | 83 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-20 | 26 | 84 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.8E-10 | 27 | 38 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.53E-22 | 34 | 85 | No hit | No description |
PRINTS | PR00367 | 6.8E-10 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MKKEVDQAIM VSRSREAEAE ELRSRRFRGV RRRTWGKWVA EIRMLRCRSR VWLGSYRTAE 60 QAARAYDAAS FCLRGPAAFL NFPESPPAEF LPYPLRPLHD IHLSPQQIRT IAANYATMTP 120 SSTSISTSTS GLPPQQSNLM DNSALEEAGG EGSASVTTHV DSTKSAPRNM IFPNLNDTLD 180 EDSEDSSER |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-18 | 26 | 83 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT122393 | 0.0 | BT122393.1 Picea sitchensis clone WS0451_B11 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | D5A8A7 | 1e-136 | D5A8A7_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G21960.1 | 9e-24 | ERF family protein |