PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_5565092g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB_related | ||||||||
Protein Properties | Length: 78aa MW: 8682.56 Da PI: 6.7889 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.5 | 1.3e-07 | 8 | 51 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT +++ +a +++ ++ W+ +a+++ g+++ ++k ++ MA_5565092g0010 8 SWTSKQNKQFEKALALYDKDtpdPWHNVASMVD-GKSPDEVKKHY 51 7********************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.47 | 1 | 59 | IPR017884 | SANT domain |
SMART | SM00717 | 3.5E-6 | 5 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-5 | 7 | 59 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.69E-12 | 7 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.31E-4 | 15 | 55 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 78 aa Download sequence Send to blast |
SSSGSHSSWT SKQNKQFEKA LALYDKDTPD PWHNVASMVD GKSPDEVKKH YEILLEDFKC 60 IEAGQVPYGK YKSSTSSG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-30 | 1 | 74 | 3 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT113498 | 1e-107 | BT113498.1 Picea glauca clone GQ03411_B22 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021680636.1 | 1e-32 | protein RADIALIS-like 3 | ||||
Swissprot | Q58FS3 | 3e-30 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | D5ADC1 | 1e-29 | D5ADC1_PICSI; Uncharacterized protein | ||||
STRING | XP_008241690.1 | 6e-30 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP347 | 12 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 3e-26 | RAD-like 6 |
Publications ? help Back to Top | |||
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