PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_55512g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | LBD | ||||||||
Protein Properties | Length: 98aa MW: 11088.5 Da PI: 4.4316 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 32 | 3.4e-10 | 2 | 40 | 62 | 100 |
DUF260 62 vyeAearardPvyGavgvilklqqqleqlkaelallkee 100 v +A+ r+rdPvyG+vgvi++l++++++l+++la++++e MA_55512g0010 2 VHQARERIRDPVYGCVGVINDLKNKVSELQSQLASTQAE 40 789*******************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 8.626 | 1 | 41 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.0E-8 | 1 | 38 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
MVHQARERIR DPVYGCVGVI NDLKNKVSEL QSQLASTQAE VASITQQHAN LLTVIFGCHE 60 VLEPNFYIPS LEETEDTHMN APVADDVDPL QLWKPFWT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LQI9 | 1e-30 | B8LQI9_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16263 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 3e-16 | LOB domain-containing protein 1 |