PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_55357g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | LBD | ||||||||
Protein Properties | Length: 238aa MW: 26818.1 Da PI: 6.6122 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.4 | 4.5e-42 | 64 | 164 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaC++lrr+C ++Cvlapyfp ++p+kfa vh++FGasn++++l+++++e+r+d++ss+vyeA+ar+rdP+yG++g + +lqqq++ l+++la+ MA_55357g0010 64 PCAACRTLRRRCGDKCVLAPYFPPNDPQKFATVHRVFGASNIIRILQDVDTEHRDDTVSSMVYEARARLRDPIYGCAGAVCQLQQQVCDLQSQLAT 159 7*********************************************************************************************** PP DUF260 97 lkeel 101 +++++ MA_55357g0010 160 AQAQI 164 99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.407 | 63 | 164 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.2E-41 | 64 | 161 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MRQGWKMALD VQKGFDAAST RSHAHNTHII HSYDEITFND LANIRRLQIY KMSEGNPRTK 60 VATPCAACRT LRRRCGDKCV LAPYFPPNDP QKFATVHRVF GASNIIRILQ DVDTEHRDDT 120 VSSMVYEARA RLRDPIYGCA GAVCQLQQQV CDLQSQLATA QAQILNLHCQ QANLLAFLTD 180 NNSSFGKGGE TADYDYDEPL GSSWTDSPAS QVTDGEKDMN VLFQFQEMEM FTWSRNGK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-40 | 63 | 171 | 10 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-40 | 63 | 171 | 10 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT104771 | 0.0 | BT104771.1 Picea glauca clone GQ02814_K04 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022875086.1 | 9e-60 | LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 3e-51 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A2Z7BKX0 | 3e-58 | A0A2Z7BKX0_9LAMI; LOB domain-containing protein 11-like | ||||
TrEMBL | A0A3Q7J1V1 | 2e-58 | A0A3Q7J1V1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc11g072470.1.1 | 5e-59 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 9e-46 | LOB domain-containing protein 1 |