PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_55337g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 471aa    MW: 53401.1 Da    PI: 9.6337
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_55337g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.1e-08107151147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ +++E+ l + + +++G++ Wk+Ia+ ++ g t+k +  +w  y
    MA_55337g0010 107 RGSLSEDEQRLVISLQRKYGNK-WKKIASQVP-GTTAKRLGKWWEVY 151
                      78889*****************.*********.****9998888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173751103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-757108IPR009057Homeodomain-like
PROSITE profilePS500905.12258101IPR017877Myb-like domain
SuperFamilySSF466892.14E-1087159IPR009057Homeodomain-like
PROSITE profilePS5129417.963102156IPR017930Myb domain
SMARTSM007171.3E-6106154IPR001005SANT/Myb domain
PfamPF002493.3E-7107150IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-12109151IPR009057Homeodomain-like
CDDcd001671.50E-4111151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MRSRASRRNH RTSDAPACAS GGVLAQESNT PAIIFFKFLA VRSGGSQSMK ERQQCQSEKD  60
SPLHACVKQN ERPEWNHVSQ RMNRGLDRDP KSSAESWKNY LKPGVKRGSL SEDEQRLVIS  120
LQRKYGNKWK KIASQVPGTT AKRLGKWWEV YGEKQDKIKD TEERSIADSP NYTIEGGKYD  180
DILETFAEKY MQRQKQLATP SSCNLPSIAA MPYVSPAISL GMPTNPTADF IHFAIPSAIT  240
PSLPPWLSNR PNSAHGFGNE TFLNSAPRLS NSSPTSSSSP SVTLSLSPSS SIPVISNTAS  300
ACSSWMKNTT ALNNISGKEN NRGNPQIEMP SIDPGNSGAA DRREIIQEMS MFLQHCRELE  360
EKQQSWLVHK KEACWRLKRL EQQLEAEKAR KRQEKMEEIE FKVRALREEE SLYMNRLETD  420
YKEQLSRIHR DAEMKEGRVV EMWTAKHIQL AKLFEQIVHR HDSHKSSSES H
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027075224.11e-102protein rough sheath 2 homolog
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP50961421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37630.13e-79MYB family protein