PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_55226g0020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 187aa MW: 21191.6 Da PI: 5.3584 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.9 | 1.7e-15 | 23 | 69 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 ++kG+r +kk+g+W++eIr + r++lg+++t+e+Aa+a++ a +l+ MA_55226g0020 23 QFKGIR-RKKWGKWASEIRNS-----KDRIWLGSYDTPEKAARAYDFAVYCLR 69 69***9.556**********4.....5*******************8888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.8E-24 | 22 | 79 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.3E-27 | 23 | 84 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.574 | 23 | 78 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.60E-23 | 23 | 80 | No hit | No description |
SuperFamily | SSF54171 | 4.45E-18 | 23 | 80 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.7E-9 | 24 | 67 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-8 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-8 | 44 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MAKPSSNHIS HSRPKNRSLE SRQFKGIRRK KWGKWASEIR NSKDRIWLGS YDTPEKAARA 60 YDFAVYCLRV SKANFNFPYS PPEIPYASSL SKQQIKAATA KFAAEEIRPP SEANTTFSSS 120 CSKAESNISV EQVSAFWDLV LESSIEGQEI SVEQDPAFWD LVLEDLDSCD SITFEDFPPI 180 DDFLHIS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-16 | 20 | 79 | 11 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022147536.1 | 1e-34 | ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | B8LPP6 | 2e-66 | B8LPP6_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G21960.1 | 1e-33 | ERF family protein |