PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_55215g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NAC
Protein Properties Length: 469aa    MW: 53762.6 Da    PI: 7.3505
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_55215g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.73.3e-551212481128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                    lppGfrFhPtdeelv +yLkkkv+  k+el ++i+evdiyk+ePwdL+ k  + +++ ewyfFs rd+ky++g+r+nrat++gyWkatgkd++v s
  MA_55215g0010 121 LPPGFRFHPTDEELVAYYLKKKVHCWKIEL-DIIPEVDIYKCEPWDLHeKsFMPGRDLEWYFFSARDRKYPNGSRTNRATEAGYWKATGKDRKVSS 215
                    79****************************.99**************84334555777*************************************9 PP

            NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + +++g+kktLvfy+grap+g +tdWvmheyrl
  MA_55215g0010 216 -HMRQIGMKKTLVFYRGRAPHGCRTDWVMHEYRL 248
                    .999****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.03E-63113271IPR003441NAC domain
PROSITE profilePS5100559.585121271IPR003441NAC domain
PfamPF023651.4E-28122248IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
ERPVEKLRRR PHHPTELVAA TAGFNREQGQ TDRVGKRRPS RGALCVKRNS IEQKRRPRSV  60
PNELEVEVPL VEKERAPGNQ SHTICRAKPD AIKKPGPFSS ARSAGVGEKD RHLAAMAPMS  120
LPPGFRFHPT DEELVAYYLK KKVHCWKIEL DIIPEVDIYK CEPWDLHEKS FMPGRDLEWY  180
FFSARDRKYP NGSRTNRATE AGYWKATGKD RKVSSHMRQI GMKKTLVFYR GRAPHGCRTD  240
WVMHEYRLDE KECEASASLQ EAYALCRVFK KSGPGPKMGE QYGAPVDNDF SCAMGNLFNK  300
NMLSSVKEQS EEKPSPVSQQ QVDPTNSREI SSEIINDMNG DDAMHKKSLQ LLRYGNANCS  360
LASPNEFTKH PKVEPNESSC PSFEVDYFPK NCLNLSESRM PTQYLLGEQI HLSVEEAEIL  420
EQIYQDVKTS QEITYISQFI NSDFEELQNS EDYIHLDDFV SRCNIEKDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-521052718168NAC domain-containing protein 19
3swm_B2e-521052718168NAC domain-containing protein 19
3swm_C2e-521052718168NAC domain-containing protein 19
3swm_D2e-521052718168NAC domain-containing protein 19
3swp_A2e-521052718168NAC domain-containing protein 19
3swp_B2e-521052718168NAC domain-containing protein 19
3swp_C2e-521052718168NAC domain-containing protein 19
3swp_D2e-521052718168NAC domain-containing protein 19
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1029070.0BT102907.1 Picea glauca clone GQ0202_O05 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010270697.11e-101PREDICTED: NAC domain-containing protein 45
RefseqXP_010908787.11e-101NAC domain-containing protein 86 isoform X2
TrEMBLA0A1U8ARY41e-100A0A1U8ARY4_NELNU; NAC domain-containing protein 45
STRINGXP_010270697.11e-101(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.13e-90NAC domain containing protein 28