PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_55215g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | NAC | ||||||||
Protein Properties | Length: 469aa MW: 53762.6 Da PI: 7.3505 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 177.7 | 3.3e-55 | 121 | 248 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeelv +yLkkkv+ k+el ++i+evdiyk+ePwdL+ k + +++ ewyfFs rd+ky++g+r+nrat++gyWkatgkd++v s MA_55215g0010 121 LPPGFRFHPTDEELVAYYLKKKVHCWKIEL-DIIPEVDIYKCEPWDLHeKsFMPGRDLEWYFFSARDRKYPNGSRTNRATEAGYWKATGKDRKVSS 215 79****************************.99**************84334555777*************************************9 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++g+kktLvfy+grap+g +tdWvmheyrl MA_55215g0010 216 -HMRQIGMKKTLVFYRGRAPHGCRTDWVMHEYRL 248 .999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.03E-63 | 113 | 271 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.585 | 121 | 271 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-28 | 122 | 248 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence Send to blast |
ERPVEKLRRR PHHPTELVAA TAGFNREQGQ TDRVGKRRPS RGALCVKRNS IEQKRRPRSV 60 PNELEVEVPL VEKERAPGNQ SHTICRAKPD AIKKPGPFSS ARSAGVGEKD RHLAAMAPMS 120 LPPGFRFHPT DEELVAYYLK KKVHCWKIEL DIIPEVDIYK CEPWDLHEKS FMPGRDLEWY 180 FFSARDRKYP NGSRTNRATE AGYWKATGKD RKVSSHMRQI GMKKTLVFYR GRAPHGCRTD 240 WVMHEYRLDE KECEASASLQ EAYALCRVFK KSGPGPKMGE QYGAPVDNDF SCAMGNLFNK 300 NMLSSVKEQS EEKPSPVSQQ QVDPTNSREI SSEIINDMNG DDAMHKKSLQ LLRYGNANCS 360 LASPNEFTKH PKVEPNESSC PSFEVDYFPK NCLNLSESRM PTQYLLGEQI HLSVEEAEIL 420 EQIYQDVKTS QEITYISQFI NSDFEELQNS EDYIHLDDFV SRCNIEKDH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-52 | 105 | 271 | 8 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-52 | 105 | 271 | 8 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-52 | 105 | 271 | 8 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-52 | 105 | 271 | 8 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-52 | 105 | 271 | 8 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-52 | 105 | 271 | 8 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-52 | 105 | 271 | 8 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-52 | 105 | 271 | 8 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT102907 | 0.0 | BT102907.1 Picea glauca clone GQ0202_O05 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010270697.1 | 1e-101 | PREDICTED: NAC domain-containing protein 45 | ||||
Refseq | XP_010908787.1 | 1e-101 | NAC domain-containing protein 86 isoform X2 | ||||
TrEMBL | A0A1U8ARY4 | 1e-100 | A0A1U8ARY4_NELNU; NAC domain-containing protein 45 | ||||
STRING | XP_010270697.1 | 1e-101 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 3e-90 | NAC domain containing protein 28 |