PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_54954g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | WRKY | ||||||||
Protein Properties | Length: 190aa MW: 21801.2 Da PI: 7.1254 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 88.8 | 4.7e-28 | 110 | 167 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYG+K k+s++pr+YYrC+ +C vkk ver+a+d+ +v++tY g+Hnhe MA_54954g0010 110 QDGYKWRKYGRKYLKNSPNPRNYYRCSNISCDVKKTVERDAHDKGLVITTYVGKHNHE 167 8********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.8E-30 | 99 | 169 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.75E-26 | 101 | 169 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.528 | 104 | 169 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.5E-28 | 109 | 168 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-21 | 110 | 167 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MNEGAEAFEI SDFLVLEEEF DNSCKTEDAG DQSYNFNSVN SGPSIQLDYG RSFPSNRPWI 60 QGIHSDQNST VIQTDEPPET MNPKKISRKR KAEGALKYAF LTRSETDILQ DGYKWRKYGR 120 KYLKNSPNPR NYYRCSNISC DVKKTVERDA HDKGLVITTY VGKHNHESPT VIYYIGRHEM 180 HQASAAMPSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-23 | 102 | 169 | 7 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269|PubMed:21030507}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT113446 | 0.0 | BT113446.1 Picea glauca clone GQ03408_M17 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q93WU9 | 3e-27 | WRK51_ARATH; Probable WRKY transcription factor 51 | ||||
TrEMBL | A0A0D6R4C9 | 5e-47 | A0A0D6R4C9_ARACU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64810.1 | 1e-29 | WRKY DNA-binding protein 51 |
Publications ? help Back to Top | |||
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