PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_5374g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | HSF | ||||||||
Protein Properties | Length: 336aa MW: 37595.3 Da PI: 7.7274 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 115.7 | 2.8e-36 | 26 | 116 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+y++++d++++++isw+e g++f+v+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF++++F+kg+k+ll++i+ MA_5374g0010 26 FLIKTYQLVDDSKTDDIISWNEAGTTFIVWRPAEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFSNEYFRKGEKQLLSEIH 113 9*****************************************************************99.........******************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k MA_5374g0010 114 RRK 116 *97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.9E-38 | 17 | 109 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.3E-58 | 22 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.65E-34 | 23 | 115 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 4.7E-20 | 26 | 49 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 7.8E-32 | 26 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.7E-20 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 65 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.7E-20 | 77 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MAHSAKQNND GTPVTVESHR SVPAPFLIKT YQLVDDSKTD DIISWNEAGT TFIVWRPAEF 60 ARDLLPNYFK HNNFSSFVRQ LNTYGFRKIV PDRWEFSNEY FRKGEKQLLS EIHRRKGLIQ 120 PPPPPENRSI SPSNSGDEQT WSSTSSPNSP PAVEALSHKN AMEENEKLRK ENMLLVSELT 180 QMKKLHNQLL LFLSRHVNIT SADHVASFLS QSVGPSEGLS MLARLKDYLE QYGGEEISRD 240 FPGSSLSSGV SVVNDDPFVS SSAKEIMASK RPPFVDGACR EIGRKSYLSV KIEDDDEKGN 300 PKLFGVPLLP SKRSLPGSSD NGQPESMIRK IGRCAN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-23 | 21 | 115 | 25 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-23 | 21 | 115 | 25 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-23 | 21 | 115 | 25 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT112777 | 0.0 | BT112777.1 Picea glauca clone GQ03320_N17 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010278594.1 | 6e-78 | PREDICTED: heat stress transcription factor B-2b-like | ||||
Swissprot | P22335 | 3e-70 | HSF24_SOLPE; Heat shock factor protein HSF24 | ||||
TrEMBL | A0A0D6R3L9 | 1e-167 | A0A0D6R3L9_ARACU; Uncharacterized protein | ||||
STRING | XP_010278594.1 | 2e-77 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP96 | 17 | 233 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 1e-61 | heat shock transcription factor B4 |
Publications ? help Back to Top | |||
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