PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_53573g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 304aa    MW: 35462.6 Da    PI: 6.83
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_53573g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.22.2e-142168148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed +l +++k +G g+W++ +r+ g++R +k+c++rw++yl
    MA_53573g0010 21 RGAWTAKEDMILTEYIKTHGVGRWRSLPRKSGLKRGGKSCRLRWLNYL 68
                     89******************************99************97 PP
2Myb_DNA-binding55.61.2e-1775119248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g+ ++eE+ell++++++lG++ W++Ia +++ gRt++++k++w+++l
    MA_53573g0010  75 GNISPEEEELLIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 119
                      6779*****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.0971668IPR017930Myb domain
SuperFamilySSF466891.61E-2819115IPR009057Homeodomain-like
SMARTSM007172.3E-122070IPR001005SANT/Myb domain
PfamPF002495.6E-122168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-222275IPR009057Homeodomain-like
CDDcd001673.15E-82368No hitNo description
PROSITE profilePS5129427.54269123IPR017930Myb domain
SMARTSM007172.0E-1773121IPR001005SANT/Myb domain
PfamPF002494.9E-1675119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-2676123IPR009057Homeodomain-like
CDDcd001672.14E-1278119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGRSPGCWSF SKDDEHEGFN RGAWTAKEDM ILTEYIKTHG VGRWRSLPRK SGLKRGGKSC  60
RLRWLNYLRP DIKHGNISPE EEELLIRLHR LLGNRWSLIA GRLPGRTDNE IKNYWNTHLR  120
KKVEISEFEP KIQKHFKNWE TPSYSDHKEE QVKDKDNCIS QSTPLKTRAD RYCGKVTDNY  180
VLKQDNHVAI NPEEEGLKAA ADHVVETDAS KSWCQLLLEE CIGDDKYDRL DVTDGLQANG  240
IVGSHSFGIE HHLHAQFYYP TCNYETNSSY PSFFEDQEFR HSKHFHFPYF ESFLDLSELP  300
SFIP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-241912325128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the negative regulation of flavonol biosynthesis. Represses the early phenylpropanoid genes, phenylalanine ammonia-lyase (PAL), cinnamate 4-hydroxylase (C4H) and 4-coumarate-CoA ligase (4CL), as well as the flavonoid-specific genes, flavonoid 3'-hydroxylase (F3'H) and dihydroflavonol 4-reductase (DFR) (PubMed:24319076). Plays a role in seed germination inhibition. Negatively regulates the expression of the abscisic acid (ABA) signaling transcription factor ABI5 in seeds (PubMed:25053018). {ECO:0000269|PubMed:24319076, ECO:0000269|PubMed:25053018}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and osmotic stress (PubMed:25053018). Induced by salt stress (PubMed:24319076, PubMed:25053018). {ECO:0000269|PubMed:24319076, ECO:0000269|PubMed:25053018}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ423792e-53MYB7_ARATH; Transcription factor MYB7
TrEMBLA0A167V8X01e-115A0A167V8X0_PICAB; Transcription factor MYB29
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.12e-47myb domain protein 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  4. Lotkowska ME, et al.
    The Arabidopsis Transcription Factor MYB112 Promotes Anthocyanin Formation during Salinity and under High Light Stress.
    Plant Physiol., 2015. 169(3): p. 1862-80
    [PMID:26378103]
  5. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  6. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]