PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_53545g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | SRS | ||||||||
Protein Properties | Length: 557aa MW: 58304.4 Da PI: 8.091 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 198.7 | 1.8e-61 | 331 | 487 | 4 | 150 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskke 99 ++++CqdCGnqakkdC h RCRtCCksrgfdC+th+kstWvpaakrre+qq++aaa + a + + ++kr r +s++++++s+t++s ++++++ MA_53545g0010 331 NSTTCQDCGNQAKKDCRHLRCRTCCKSRGFDCSTHLKSTWVPAAKRREKQQAEAAAIA---AGHPRPKTKRARFVSSSNATTTSHTSTSATTPPRS 423 6789*********************************************999888744...345677888999999999999************99 PP DUF702 100 letss.............lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydq 150 ++++s lP+e++++avf+cvrv++++dg +e+aYq++v+igGh+f+G+Lyd MA_53545g0010 424 SDINStqiahqdlnfkanLPAEIKAQAVFKCVRVTAIEDGVDEFAYQATVKIGGHIFRGVLYDD 487 9999999*******************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 2.4E-56 | 332 | 487 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 5.8E-26 | 334 | 376 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 1.1E-24 | 442 | 486 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 557 aa Download sequence Send to blast |
MEEVRGCRGS ELWLIVATVA PAVASTGGAS GGPRRTEGGI PEWVSSSSSS SLQLQPRGVI 60 KERDFSLGFN GGGGGAGGVT HSAGSTSTSH THHHSRYTLV RPLSYGYPSG IEMAVGGMLG 120 AGVGESPAGG SGPYAGGPAR LGSISGGSGG INIVNRESLR DVVTRAGGGG GGGTEDFVSL 180 YTRVRREDDP TSAPRGGGSF VAYATTPRTV DDPDHHANIQ SSMPVLSSAH HREDDRGVDQ 240 GEIQVWQQAR DLRGDGNQES KEKAMASQMR VMEISGGQQA PERRSNCELG ATGDQSQLSN 300 VENKNGGGGL AVTVAAMPKT NTNPNTITNA NSTTCQDCGN QAKKDCRHLR CRTCCKSRGF 360 DCSTHLKSTW VPAAKRREKQ QAEAAAIAAG HPRPKTKRAR FVSSSNATTT SHTSTSATTP 420 PRSSDINSTQ IAHQDLNFKA NLPAEIKAQA VFKCVRVTAI EDGVDEFAYQ ATVKIGGHIF 480 RGVLYDDQRA DTSNLHSNLP DLHLGGTTTM ASTSAMIDPT AGGGVYGASS SNILGGMDYR 540 NPISTQHQTM FDMQCLS |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT117006 | 0.0 | BT117006.1 Picea glauca clone GQ03811_A07 mRNA sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1313 | 15 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.2 | 2e-39 | Lateral root primordium (LRP) protein-related |