PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_53373g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 390aa MW: 44091.6 Da PI: 5.745 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.9 | 1.6e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed+ll ++++ +G g+W++ ++ g+ R++k+c++rw +yl MA_53373g0010 14 RGPWTAREDLLLTKYIEAHGEGQWRALPKQAGLLRCGKSCRLRWMNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 52.4 | 1.2e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T +E+el+v+++k+lG++ W++Ia +++ gRt++++k++w+++l MA_53373g0010 67 RGNITLDEEELIVRLHKLLGNR-WSLIAGRLP-GRTDNEIKNFWNTHL 112 7899******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.844 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.8E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-22 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.39E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.743 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-25 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.73E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MGRAPCCSKV GLHRGPWTAR EDLLLTKYIE AHGEGQWRAL PKQAGLLRCG KSCRLRWMNY 60 LRPDIKRGNI TLDEEELIVR LHKLLGNRWS LIAGRLPGRT DNEIKNFWNT HLSKKLMMKG 120 IDPKTHQPAP ERIHKPRRLM KDNEDQETES FEHGMTEKDV ISSSGGKGVQ PIHLPKPNRY 180 IAFPRHLSHE ANVGITNTSV TNSDVQDVLL SPSIDLNSPC KNLQASVDSD HSSSGMLSDI 240 NPIHELGREV SNLPQQGDPE DCFPWACIED WPSEFQPTEP KCISNEVELE LQTSANNHII 300 PPPTKACRNN KPENCSNTLQ KIYEEYLKEF LQDETVPSNA EMVSSTTKNN GDDQEINIFP 360 EGLSSVWECL EGEDELLKDQ RASETLSLHL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-24 | 12 | 116 | 5 | 108 | B-MYB |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU131224 | 0.0 | KU131224.1 Picea abies transcription factor MYB35 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A167V936 | 0.0 | A0A167V936_PICAB; Transcription factor MYB35 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 9e-71 | myb domain protein 5 |