PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_53351g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family WRKY
Protein Properties Length: 651aa    MW: 70640.9 Da    PI: 6.5975
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_53351g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.22.7e-31248304259
                    --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                    dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkk+ers  d++v+ei+Y+g Hnh 
  MA_53351g0010 248 DDGYNWRKYGQKHVKGSEYPRSYYKCTHPSCPTKKKIERSL-DGHVTEIVYKGVHNHI 304
                    8****************************************.***************5 PP
2WRKY105.72.3e-33430488159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                    ldDgy+WrKYGqK+vkg+++prsYY+Ct agC v+k+ver+++dpk+v++tYeg+Hnh+
  MA_53351g0010 430 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCAVRKHVERASHDPKAVITTYEGKHNHD 488
                    59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-27241306IPR003657WRKY domain
SuperFamilySSF1182904.84E-24246305IPR003657WRKY domain
SMARTSM007749.2E-34247305IPR003657WRKY domain
PfamPF031062.2E-23248303IPR003657WRKY domain
PROSITE profilePS5081122.481248306IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-37415490IPR003657WRKY domain
SuperFamilySSF1182903.01E-29422490IPR003657WRKY domain
PROSITE profilePS5081138.836425490IPR003657WRKY domain
SMARTSM007742.7E-39430489IPR003657WRKY domain
PfamPF031066.1E-26431488IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MDFSELLAGN NGEGLIWGAD EPKFEFGTGG GVNSIGRGGN SFAERLAARG GEPPKLNTAK  60
FKTMPPSSLP IPKSPFFSIP PGLSPTTLLD SPVLLCDGQM LESPTTGTFP FKSFSFESTA  120
ATASLDIVKN EDGNCSSFAF KPLAGSNPSS DMQPFGNLAN FGYNHHQSLK GVQDDAQRWN  180
SPFFSKTKEP VEESSSEPPM TGTTTMRVVP LQVVSSQEAS LEEQQHRQLS ELNQTTVVPP  240
TGIERPSDDG YNWRKYGQKH VKGSEYPRSY YKCTHPSCPT KKKIERSLDG HVTEIVYKGV  300
HNHIKPQPNR RMGAAAAAAA AAARHEEGES AEGYGALVKV EDPSSTPPRR QNSNPLESSG  360
TPEHSSISAS EDDDGRTQVD KFSGDEDADE EESDSKRRKK DPNAMDIIGA TRTIREPRVV  420
VQTTSDIDIL DDGYRWRKYG QKVVKGNPNP RSYYKCTNAG CAVRKHVERA SHDPKAVITT  480
YEGKHNHDVP APRNSSHTNA GLGSGQSSVP ILQNSVAPST NAMALTAPGT QETFSHFDRH  540
PDLGNGYGNN NYMFGRIANE SLNSQNGRAG VGIPERSMGL GMGFGAFGLE SKHSEIQQAE  600
APTSFSMQIK PASHEYSSIG SGNSVHSYYS QPNERDGLIR PKEEQKGQFL L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-38248491878Probable WRKY transcription factor 4
2lex_A6e-38248491878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2697560.0EU269756.1 Pinus monticola WRKY transcription factor PmWRKY108 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010270167.11e-135PREDICTED: probable WRKY transcription factor 20
TrEMBLA0A0D6QV380.0A0A0D6QV38_ARACU; Uncharacterized protein
STRINGXP_010270167.11e-135(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.22e-87WRKY family protein