PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_52928g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family WRKY
Protein Properties Length: 374aa    MW: 41871.5 Da    PI: 9.3004
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_52928g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.95e-29158216259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    +Dg+ WrKYGqK+ ++++ prsYYrC++a gCpvkk+v+r+a+dp++v+ tYegeH+h+
  MA_52928g0010 158 SDGCPWRKYGQKMTRNNKRPRSYYRCAMApGCPVKKQVQRCAQDPTIVIATYEGEHTHS 216
                    7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-31146216IPR003657WRKY domain
SuperFamilySSF1182902.88E-26149217IPR003657WRKY domain
PROSITE profilePS5081126.521152218IPR003657WRKY domain
SMARTSM007742.2E-34157217IPR003657WRKY domain
PfamPF031066.3E-25159215IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MPGRGRECSY PAISYKCQIN DTLLAINTST LQIRRQFLKI QDEMRWKIFN RDHPREDILC  60
PRSINVESSS AISHQSHEYW GGREQEGGKE KRNVKIIDEQ SLPLKKRKNG MINSSIGQME  120
ESPNKKLQML TRGSYQYTVA APKRIVSVQT TSEEALISDG CPWRKYGQKM TRNNKRPRSY  180
YRCAMAPGCP VKKQVQRCAQ DPTIVIATYE GEHTHSLSPI AMADRNFSSN QLISEGMNRE  240
NFVADNKFIP CIARISTSST SPTITLGLTD SRLNRPESLL QPTHLAAGSF QALTSLSNDM  300
GQVFDYHNQL DNYSSIMQDS VASTKADPNF TASLAVAGSL VNLGAPVQVM PKTPPATHLP  360
DGSIQEAFMF TRYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-21148217876Probable WRKY transcription factor 4
2lex_A2e-21148217876Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022135705.17e-39probable WRKY transcription factor 31
TrEMBLA0A482CVK91e-111A0A482CVK9_9SPER; WRKY164
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.18e-31WRKY family protein