PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_52903g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

GRAS

Protein Properties

Length: 700aa MW: 77749.4 Da PI: 6.5581

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_52903g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	381.9	7.8e-117	320	685	2	371
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 ++lL+ecA+a+s+g++ +a +++ +l s +gdpmqRl+ay++e+L arl ++ly++l+ +et+ + + l+a++l+++v+P+++f++++ MA_52903g0010 320 RKLLVECATAISEGETDNALTIIMKLMPVISVYGDPMQRLTAYMVEGLVARLGPLAQSLYNTLKWKETP---TRDILSATRLLYNVCPYIEFGYVA 412 689***************************************************************9...899***************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191 a ++Ilea+++ee+vHiiDf+i+ G Q+++L++ La++++gp +lR+T+v++pes s l+ +ge+L+++A ++gv++ef++ ++++ +d+++ MA_52903g0010 413 AISTILEALKEEEKVHIIDFEIGVGSQYITLIN-LAAKAGGPSKLRVTAVHDPESIsrSFGDLHMVGEQLQELAVNVGVHLEFQI-ITQKAADVQP 506 ***************************95.9***************9988999*******************9.7999** PP GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287 +L+++pgEalaVn+++qlh+++desvs++++rd++L++vk+l+Pkvv+vve+e+++n+++Fl rf+eal+yy a+f+sl+ +l re+++ri++E+ MA_52903g0010 507 YMLDCRPGEALAVNFAFQLHHMPDESVSTRNPRDQLLRMVKGLNPKVVTVVEREMNTNTAPFLPRFMEALNYYLAVFESLDISLQRENRDRINIEK 602 ******************************************************************************************** PP GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371 ++l+r+ivn+vacegaer+er e ++kWr+r+++aGF+ +p++++++++++ l + +++ yr++ e+g+l +gW d+ Lv+v+ MA_52903g0010 603 QCLARDIVNIVACEGAERIERYEVAGKWRARMTMAGFTIYPINTTVENSVRPLFESRGNN-YRLKAEKGALHFGWLDKVLVVVT 685 ******************************************************66.******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	58.45	293	669	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.7E-114	320	685	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 700 aa Download sequence Send to blast
MSILRPLESS GSSSSEGCLN VGRNNRVGAP SSINPSNVMK LHCRPELSGM ASNPRAQLGP 60 FTPEIYTQPM ELLSKRSLSD MERQVIFRAV RQRNHNTPIL PFLSANSVVL SHSSPSLSES 120 VSSYPYHRHQ LNISPSYSQG SICNPASLAT ISDFNVDKIL SLPALQSPAS LEKPASNQNV 180 ANNRAFILPK LKSPDAHRVG IGHSKMDEYQ EGIRHKLQEL ERELLSDNDD AFIVSALSPE 240 QSSHLDREWV DTIQNLLSEE AVLHPTISGE SQGYHNSNKE NPASQASRSQ LEDQKHSFSS 300 QQEPKTSATQ PRIDAASSSR KLLVECATAI SEGETDNALT IIMKLMPVIS VYGDPMQRLT 360 AYMVEGLVAR LGPLAQSLYN TLKWKETPTR DILSATRLLY NVCPYIEFGY VAAISTILEA 420 LKEEEKVHII DFEIGVGSQY ITLINLAAKA GGPSKLRVTA VHDPESISRS FGDLHMVGEQ 480 LQELAVNVGV HLEFQIITQK AADVQPYMLD CRPGEALAVN FAFQLHHMPD ESVSTRNPRD 540 QLLRMVKGLN PKVVTVVERE MNTNTAPFLP RFMEALNYYL AVFESLDISL QRENRDRINI 600 EKQCLARDIV NIVACEGAER IERYEVAGKW RARMTMAGFT IYPINTTVEN SVRPLFESRG 660 NNYRLKAEKG ALHFGWLDKV LVVVTKAVSE DLLNPPSTIP

Sequence ? help Back to Top

Protein Sequence Length: 700 aa Download sequence Send to blast

MSILRPLESS GSSSSEGCLN VGRNNRVGAP SSINPSNVMK LHCRPELSGM ASNPRAQLGP  60
FTPEIYTQPM ELLSKRSLSD MERQVIFRAV RQRNHNTPIL PFLSANSVVL SHSSPSLSES  120
VSSYPYHRHQ LNISPSYSQG SICNPASLAT ISDFNVDKIL SLPALQSPAS LEKPASNQNV  180
ANNRAFILPK LKSPDAHRVG IGHSKMDEYQ EGIRHKLQEL ERELLSDNDD AFIVSALSPE  240
QSSHLDREWV DTIQNLLSEE AVLHPTISGE SQGYHNSNKE NPASQASRSQ LEDQKHSFSS  300
QQEPKTSATQ PRIDAASSSR KLLVECATAI SEGETDNALT IIMKLMPVIS VYGDPMQRLT  360
AYMVEGLVAR LGPLAQSLYN TLKWKETPTR DILSATRLLY NVCPYIEFGY VAAISTILEA  420
LKEEEKVHII DFEIGVGSQY ITLINLAAKA GGPSKLRVTA VHDPESISRS FGDLHMVGEQ  480
LQELAVNVGV HLEFQIITQK AADVQPYMLD CRPGEALAVN FAFQLHHMPD ESVSTRNPRD  540
QLLRMVKGLN PKVVTVVERE MNTNTAPFLP RFMEALNYYL AVFESLDISL QRENRDRINI  600
EKQCLARDIV NIVACEGAER IERYEVAGKW RARMTMAGFT IYPINTTVEN SVRPLFESRG  660
NNYRLKAEKG ALHFGWLDKV LVVVTKAVSE DLLNPPSTIP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-42	325	685	24	375	Protein SCARECROW
5b3h_D	2e-42	325	685	24	375	Protein SCARECROW
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT114502	0.0	BT114502.1 Picea glauca clone GQ03515_N01 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010649367.1	1e-166	PREDICTED: scarecrow-like protein 1
Refseq	XP_019075083.1	1e-166	PREDICTED: scarecrow-like protein 1
Refseq	XP_019075084.1	1e-166	PREDICTED: scarecrow-like protein 1
Refseq	XP_019075085.1	1e-166	PREDICTED: scarecrow-like protein 1
TrEMBL	A0A0D6R702	0.0	A0A0D6R702_ARACU; Uncharacterized protein
STRING	VIT_04s0044g01370.t01	1e-165	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP8262	11	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21450.1	1e-149	SCARECROW-like 1