PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_5280013g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 190aa    MW: 21038.7 Da    PI: 7.8114
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_5280013g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.23.2e-163483255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     +++G+r +k +g+Wv+eIr p+    +  r +lg+++t+e+Aa+a++ a  +l+g
  MA_5280013g0010 34 QFRGIRMRK-WGKWVSEIRMPK----StGRLWLGSYDTPEKAARAYDFAVCCLRG 83
                     69*****99.**********85....348********************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.5E-293392IPR001471AP2/ERF domain
CDDcd000181.23E-283493No hitNo description
PROSITE profilePS5103221.3643491IPR001471AP2/ERF domain
SMARTSM003801.1E-333497IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-193492IPR016177DNA-binding domain
PfamPF008472.6E-93583IPR001471AP2/ERF domain
PRINTSPR003676.9E-93546IPR001471AP2/ERF domain
PRINTSPR003676.9E-95773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
HVFSLIPEHP DMAKPSQNQN GRSKPKNCSL KSRQFRGIRM RKWGKWVSEI RMPKSTGRLW  60
LGSYDTPEKA ARAYDFAVCC LRGSKAKLNF PHTPPEIPCA SSLSPPQILA SAAKFASKEF  120
RLPSEDDAAF SSSGSGSEAE CSNDGQEIWA EKGSAFWDSV LLECLESGKS PNLNDFPPLD  180
ESLEYFGVHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-161892273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1038990.0BT103899.1 Picea glauca clone GQ02803_N18 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010273874.14e-36PREDICTED: ethylene-responsive transcription factor RAP2-9-like
SwissprotQ9S7L52e-34ERF18_ARATH; Ethylene-responsive transcription factor ERF018
TrEMBLA9NQM16e-87A9NQM1_PICSI; Uncharacterized protein
STRINGXP_010273874.12e-35(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.12e-36ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HY, et al.
    ORA47 (octadecanoid-responsive AP2/ERF-domain transcription factor 47) regulates jasmonic acid and abscisic acid biosynthesis and signaling through binding to a novel cis-element.
    New Phytol., 2016. 211(2): p. 599-613
    [PMID:26974851]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]