PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_52791g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | NF-YB | ||||||||
Protein Properties | Length: 215aa MW: 24388.4 Da PI: 6.155 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 172.9 | 3.4e-54 | 63 | 159 | 1 | 97 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 vreqdrf+Pianv+rim+kvlP++akis+daket+qecvsefisf+tsea+d+cq+e+rkti+++d+lwa+ +lGf++y++pl++yl++yr++eg+ MA_52791g0010 63 VREQDRFMPIANVIRIMRKVLPTHAKISDDAKETIQECVSEFISFITSEANDRCQKEQRKTITAEDVLWAMNKLGFDNYMDPLTLYLQRYRDIEGD 158 69********************************************************************************************99 PP NF-YB 97 k 97 + MA_52791g0010 159 H 159 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.5E-51 | 58 | 171 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.04E-39 | 66 | 190 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.3E-26 | 69 | 133 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 3.6E-17 | 97 | 115 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 100 | 116 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 3.6E-17 | 116 | 134 | No hit | No description |
PRINTS | PR00615 | 3.6E-17 | 135 | 153 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MVAVVPSLAT TLCSVGIAVY FPEFAWRLTL LHVNHKASMA EDASPTSQDN STSEDGDREN 60 CAVREQDRFM PIANVIRIMR KVLPTHAKIS DDAKETIQEC VSEFISFITS EANDRCQKEQ 120 RKTITAEDVL WAMNKLGFDN YMDPLTLYLQ RYRDIEGDHR GSIRGDALAK KDASSLTFST 180 GFQMNHQGHY STRLGYYKDS MTNANIHFDP YAPYK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 9e-56 | 63 | 154 | 6 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006857806.2 | 1e-75 | nuclear transcription factor Y subunit B-3 | ||||
Swissprot | Q84W66 | 1e-61 | NFYB6_ARATH; Nuclear transcription factor Y subunit B-6 | ||||
TrEMBL | E5GAV8 | 3e-99 | E5GAV8_PINCO; CCAAT-box binding factor HAP3-like protein | ||||
STRING | ERN19273 | 3e-76 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP168 | 17 | 170 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 4e-64 | nuclear factor Y, subunit B6 |