PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MA_52085g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 467aa MW: 51096.6 Da PI: 5.6857 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.9 | 5.6e-11 | 306 | 353 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P++ +k Ka +L + ++Y++sLq MA_52085g0010 306 SHSLAERVRREKINQRMKFLQDLVPTC----NKVTGKAVMLDEIINYVQSLQ 353 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.16E-17 | 300 | 371 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.31E-12 | 300 | 357 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.6E-18 | 302 | 370 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.967 | 302 | 352 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.9E-8 | 306 | 353 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.9E-11 | 308 | 358 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 467 aa Download sequence Send to blast |
MDPDFGVERQ AFEAVPDSKS LVSLHSSLSC SFNTMDTIFC DESRYSQKCT GEFGEIASQN 60 AFGGAPESII SNAGGAFFAD PSFAAKYLQK SSFSPVMAKE TSNADGSGSI GGPNVPILAN 120 SVQFHTPSVK NSVNARRWRN LEASHLGSEV SKFGIGSVPS ALVQFPSDPG FVEQAAKFSP 180 FNNIDRNSSE NVVCGASNLP PIVGGVQQGG GENMSVFSEP TKCVDDGNGK KRRAKSLTSA 240 ENSKEPEEAK AKRCRLGESS EIDDDDNNDE TSDSNSKKGK EKNSNVSQKD DNYIHVRARR 300 GQATDSHSLA ERVRREKINQ RMKFLQDLVP TCNKVTGKAV MLDEIINYVQ SLQHQVEFLS 360 MKLATVNPKL DFNIDNFFAK EMSGSFSSKG MSPTYFHLDQ LKQASLQTVP SPGSDIPSTM 420 SSVDSAEMFD GTNFQRQEGW DSELQNMYNM GLLQSRLQQH QHQQRPL |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 229 | 234 | KKRRAK |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF085036 | 0.0 | EF085036.1 Picea sitchensis clone WS0297_L11 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A9NUN3 | 0.0 | A9NUN3_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G07340.1 | 2e-52 | bHLH family protein |