PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_5115g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NAC
Protein Properties Length: 317aa    MW: 36004.6 Da    PI: 8.6668
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_5115g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.52.2e-52131401128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 
                   lppGfrF Ptdeelvv+yL++kv +++l++  +i +vd+yk++Pw+Lp+k+  +ekewyfF++rd+ky++g+r+nra+ sgyWkatg dk++++  +
  MA_5115g0010  13 LPPGFRFFPTDEELVVHYLCNKVVSHPLPA-FIIGDVDLYKYDPWQLPEKALFGEKEWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPITTCgG 108
                   79***************************9.67***************8888899*************************************99866 PP

           NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                   ++ vg+kk Lvfykg+apkg+kt+W+mheyr+
  MA_5115g0010 109 RKRVGVKKALVFYKGKAPKGSKTNWIMHEYRM 140
                   777***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-6310166IPR003441NAC domain
PROSITE profilePS5100560.86313166IPR003441NAC domain
PfamPF023651.0E-2614140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MTQKGGLEGQ IDLPPGFRFF PTDEELVVHY LCNKVVSHPL PAFIIGDVDL YKYDPWQLPE  60
KALFGEKEWY FFTPRDRKYP NGSRPNRAAG SGYWKATGAD KPITTCGGRK RVGVKKALVF  120
YKGKAPKGSK TNWIMHEYRM AEINMATRKK NTLRLDDWVL CRIYNKKSSA EKLEEKKLAE  180
EMESRRDNEE TVEQQKNSQT VQLEPSHTDA STVSAEGGLP STNSSILISQ LPAAMNLSPA  240
HQNPFYQPQS TDGAQINMKL ANQLIQKQQQ QSGQSLNFNL GLDGMQSPYF QLDHSEPSSL  300
FSPYQEYIDS YSIQRSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-811017214171NO APICAL MERISTEM PROTEIN
1ut4_B3e-811017214171NO APICAL MERISTEM PROTEIN
1ut7_A3e-811017214171NO APICAL MERISTEM PROTEIN
1ut7_B3e-811017214171NO APICAL MERISTEM PROTEIN
3swm_A2e-811017217174NAC domain-containing protein 19
3swm_B2e-811017217174NAC domain-containing protein 19
3swm_C2e-811017217174NAC domain-containing protein 19
3swm_D2e-811017217174NAC domain-containing protein 19
3swp_A2e-811017217174NAC domain-containing protein 19
3swp_B2e-811017217174NAC domain-containing protein 19
3swp_C2e-811017217174NAC domain-containing protein 19
3swp_D2e-811017217174NAC domain-containing protein 19
4dul_A3e-811017214171NAC domain-containing protein 19
4dul_B3e-811017214171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008792531.11e-92NAC domain-containing protein 68-like isoform X2
SwissprotQ52QH42e-86NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBLA0A3G2WJF91e-101A0A3G2WJF9_PICWI; NAC2
TrEMBLA9NZG81e-101A9NZG8_PICSI; Uncharacterized protein
STRINGXP_006434240.18e-91(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.15e-85NAC domain containing protein 32
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Taga Y, et al.
    Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4.
    Plant Signal Behav, 2009. 4(8): p. 740-2
    [PMID:19820348]
  3. Xia N, et al.
    Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses.
    Mol. Biol. Rep., 2010. 37(8): p. 3703-12
    [PMID:20213512]
  4. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  5. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]
  6. Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS
    IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice.
    Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60
    [PMID:26766411]