PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_50745g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 718aa    MW: 81511.9 Da    PI: 7.2697
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_50745g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.14.7e-09521561340
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                       W+ eE +ll ++v+++++g   +W+ Ia+++g+gRt +++
    MA_50745g0010 521 HWSREEIDLLRKGVQKYPKGtsqRWEVIANYIGTGRTVEEI 561
                      6************************************9886 PP
2Myb_DNA-binding21.55.4e-07661705345
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                      +W++  +  l++a k ++++   +W+++a  ++ g++  qc  ++ 
    MA_50745g0010 661 AWSAVQERALIQALKTFPKEtpqRWERVATAVP-GKSKVQCMRKFT 705
                      8********************************.*******99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465654.45E-21122225IPR001623DnaJ domain
PRINTSPR006257.6E-9131149IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1106.0E-21143248IPR001623DnaJ domain
SMARTSM002712.0E-16146221IPR001623DnaJ domain
PfamPF002263.6E-18147226IPR001623DnaJ domain
CDDcd062573.27E-14147218IPR001623DnaJ domain
PROSITE profilePS5007618.592147229IPR001623DnaJ domain
PRINTSPR006257.6E-9170185IPR001623DnaJ domain
PRINTSPR006257.6E-9201221IPR001623DnaJ domain
PROSITE patternPS006360206225IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.602.1E-6516562IPR009057Homeodomain-like
PROSITE profilePS512937.003517572IPR017884SANT domain
SMARTSM007171.3E-7518571IPR001005SANT/Myb domain
SuperFamilySSF466893.66E-8520563IPR009057Homeodomain-like
PfamPF002491.0E-7520561IPR001005SANT/Myb domain
CDDcd001678.01E-6522561No hitNo description
PROSITE profilePS512939.109657712IPR017884SANT domain
SMARTSM007172.7E-9658710IPR001005SANT/Myb domain
SuperFamilySSF466893.51E-9660708IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-4661707IPR009057Homeodomain-like
CDDcd001675.19E-6661708No hitNo description
PfamPF002493.8E-6661705IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MPRPCFCSSG DCCGLSLCWL HCFSLRFQVM FSSVGTLGDT AYVKVELVNI MPISNNWPLL  60
TYSVELEDGE PLYVSSNCLP VKASRWEPAG HSFHAAALCL LGFKEDTDEE NDDKSESGEK  120
DKGFTASYDS YRFKGKKKSA DGKEQQDHYA LLGLGHLRYL ATEDQIRKSY REAALKYHPD  180
KQASILLAEE TEEAKQSKKE EIESHFKIIQ EAYEVLIDPV KRRIYDSTDE FDDEVPSDCA  240
PQDFFKVFGP VFMRNSRWSV TQPVPPLGDD NTAIKEVDKF YDFWDSFKSW REFPHADEFD  300
LEQAESREHK RWMERQNAKL QEKAKKEEYA RIRSFVDNAY KKDPRILRRK EEEKAEKLRK  360
KEARLQAKRM KEEEVARIAE EERLRKEEEE KRAAEAALAQ KKSKEKEKKL LRKERSRLRT  420
AAASVVSKKL LGIVEDDVEK LCASLEIEKL RILCDQMGQK GELERAQLLR DALASDADGT  480
KSIEKTVLQN DTVQGHTVSQ GLQGHAKAEG LLNSYEKKEK HWSREEIDLL RKGVQKYPKG  540
TSQRWEVIAN YIGTGRTVEE ILKAIKTVLL QKPDTANSFD SFLERRKNAN PITSPLTTRD  600
EVGDSLTNGC VADTIVGEKA KGVAEQQASG GSNRSADGKG PSGGSIQSVA NGSVAGNDQD  660
AWSAVQERAL IQALKTFPKE TPQRWERVAT AVPGKSKVQC MRKFTEMKEN FRNKKSSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A3e-1924334620123Zuotin
5dje_B3e-1924334620123Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1347370RRKEEEKAEKLRKKEARLQAKRMK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1127250.0BT112725.1 Picea glauca clone GQ03320_B04 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067661.10.0PREDICTED: dnaJ homolog subfamily C member 2
TrEMBLA0A0D6R2D90.0A0A0D6R2D9_ARACU; Uncharacterized protein
STRINGXP_010067661.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP38231521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06110.20.0DnaJ domain ;Myb-like DNA-binding domain