PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_502153g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 231aa MW: 25653.9 Da PI: 9.6517 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.8 | 4.3e-21 | 33 | 83 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr ++ +gr++AeIrd ++ ++r +lg+f+taeeAa+a+++a+++l+g MA_502153g0010 33 THFRGVRKRP-WGRFAAEIRDpWK----KTRLWLGTFDTAEEAARAYDNAARNLRG 83 589*******.**********883....5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.43E-29 | 33 | 90 | No hit | No description |
Pfam | PF00847 | 1.1E-13 | 33 | 83 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-21 | 34 | 91 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.3E-35 | 34 | 97 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.471 | 34 | 91 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-31 | 34 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.6E-11 | 35 | 46 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.6E-11 | 57 | 73 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MAVDTMQMAR VGMKMEIGVG DCEETASYAV KGTHFRGVRK RPWGRFAAEI RDPWKKTRLW 60 LGTFDTAEEA ARAYDNAARN LRGPKAKTNF VLQGDSTNSA ILFNNGVTRA INVQRQEWPV 120 FHSKQEPSRQ EWPVFHSKQE PSVSSNSCAA PTALASRLDN DRVSSCGASQ SLAVENQTPP 180 TKKQKLLFGT HLFESSHISQ LREDAVACRS SRRQAPLLLD LNLPPAANDV D |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-21 | 31 | 96 | 2 | 68 | ATERF1 |
3gcc_A | 2e-21 | 31 | 96 | 2 | 68 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00542 | DAP | Transfer from AT5G44210 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT113988 | 0.0 | BT113988.1 Picea glauca clone GQ03505_O03 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010278126.1 | 2e-38 | PREDICTED: ethylene-responsive transcription factor 9-like | ||||
TrEMBL | E0ZH20 | 1e-100 | E0ZH20_PICSI; Ethylene-responsive element binding factor-like protein | ||||
STRING | XP_010278126.1 | 6e-38 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 1e-25 | erf domain protein 9 |