PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_500288g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 366aa MW: 40176.3 Da PI: 9.3269 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.4 | 1.7e-18 | 40 | 88 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr+++ +g+WvAeIr+p++ r+r +lg+f tae+Aa+a+++a++ l+g MA_500288g0010 40 FRGVRQRS-WGKWVAEIREPRK---RTRKWLGTFATAEDAARAYDRAALTLYG 88 8****999.**********954...5***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 4.0E-35 | 39 | 102 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-12 | 39 | 88 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.957 | 39 | 96 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.03E-20 | 39 | 94 | No hit | No description |
SuperFamily | SSF54171 | 2.75E-20 | 40 | 96 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.8E-29 | 40 | 95 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.6E-10 | 40 | 51 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.6E-10 | 62 | 78 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MVGEGIGAEE TGRAQTPPQL GKGKRKCKGK GGPDNNKFRF RGVRQRSWGK WVAEIREPRK 60 RTRKWLGTFA TAEDAARAYD RAALTLYGSR AHLNLHPPSA RPPVSSHPTT LRPLLPRPPA 120 LNPRADTYHR FLLSCFPPSA ALQFNGVQGG AVLMPPTSMQ HYSFLDQQTR DQNLQPAPPQ 180 SALNSKQALH VAATMQPQFV SQNNNMDEGP ASGVMSFEGL RLTGRKNKGT AKNEHVIQQP 240 PTYLCKSQNT NSYQPVLASN PVLMNPCVGN EFYNETSSYS FSPTVAANLS LSFPPTGAKD 300 VAVNQVAASM TARDPVPPSP AFMWQCTQED YEQAMMTASL GVMDTNNPCM WDYDGPDSDS 360 FMFDSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-16 | 40 | 95 | 6 | 62 | ATERF1 |
3gcc_A | 4e-16 | 40 | 95 | 6 | 62 | ATERF1 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40220.1 | 5e-22 | ERF family protein |