PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MA_493100g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 193aa MW: 21404.1 Da PI: 9.248 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 27.3 | 9.3e-09 | 6 | 33 | 29 | 56 |
AP2 29 krfslgkfgtaeeAakaaiaarkklege 56 ++++lg++ t+e+Aa+a++aa+ +l+g+ MA_493100g0010 6 QKIWLGSHKTPEQAARAYDAAMYCLRGP 33 789**********************995 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 12.721 | 1 | 40 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.4E-5 | 2 | 46 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.61E-15 | 2 | 42 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.9E-15 | 2 | 42 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.81E-10 | 4 | 42 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.0E-4 | 5 | 32 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 193 aa Download sequence Send to blast |
MPRSRQKIWL GSHKTPEQAA RAYDAAMYCL RGPNAKFNFP DSVPNIPSAS SLSPKQIQHA 60 ALKYALGQTP SSLPSLNNNK EEPASPSQSS SVPETNLSTE KQQISDEWQD LAPWSSLFAA 120 SSSSSRRATS RQTCGTSKIF EFLEQTNLPF LVGFEHATCF WPTPNVLHDL AGMRQVFKFP 180 HAFLIQNFVG TMK |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF087221 | 0.0 | EF087221.1 Picea sitchensis clone WS02732_A16 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_026430012.1 | 3e-24 | ethylene-responsive transcription factor ERF017-like | ||||
TrEMBL | B8LN81 | 6e-71 | B8LN81_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G19210.1 | 2e-24 | ERF family protein |