PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_488767g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 88aa    MW: 9763.78 Da    PI: 6.527
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_488767g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.34e-092063344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT +  +++ +a +++ ++   +W+ +a+++  g++++++k ++
   MA_488767g0010 20 NWTSQQNKQFEKALAMYEKDtpeRWHNVASMVT-GKSPEEVKRHY 63
                     8*******************************9.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.7931671IPR017884SANT domain
SMARTSM007176.7E-81769IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-71973IPR009057Homeodomain-like
CDDcd001672.62E-62067No hitNo description
SuperFamilySSF466892.11E-122074IPR009057Homeodomain-like
PfamPF002491.9E-72063IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MAGQPASSSG SPSSSNTATN WTSQQNKQFE KALAMYEKDT PERWHNVASM VTGKSPEEVK  60
RHYEILLEEL NSIEEGKVPF PKYKSSGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-291387377RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1142911e-112BT114291.1 Picea glauca clone GQ03511_P20 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021680636.12e-35protein RADIALIS-like 3
SwissprotF4JVB86e-30RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLD5ADC11e-35D5ADC1_PICSI; Uncharacterized protein
STRINGPOPTR_0007s13000.13e-32(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-24RAD-like 6
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]