PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_48006g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 234aa MW: 26061.2 Da PI: 8.6971 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.8 | 2.8e-14 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+ ++ +G g W++ ++ g++ ++k+c+ rw +yl MA_48006g0010 16 KGAWTQEEDARLIAHIRTHGEGGWSSLPKAAGLRHCRKSCRFRWKNYL 63 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.9 | 3.7e-16 | 69 | 113 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++++ Edel+++++ +lG++ W++Ia +++ gRt++++k++w ++ MA_48006g0010 69 RGNFSEGEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWSTH 113 89********************.*********.***********876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.14 | 11 | 63 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-19 | 11 | 66 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-11 | 15 | 65 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.74E-27 | 15 | 110 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.0E-12 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.72E-10 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 27.036 | 64 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-25 | 67 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.3E-15 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-14 | 69 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.65E-11 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MGKSSCCEES QAHTNKGAWT QEEDARLIAH IRTHGEGGWS SLPKAAGLRH CRKSCRFRWK 60 NYLRPDLKRG NFSEGEDELI IKLHSLLGNK WSLIAGRLPG RTDNEIKNYW STHIKRKVLS 120 RGLDPQTHRP LCPPHNSKTT RNSPPAPEQE IPAFQSTRTV EIADFFQHDR SESSPIKPAA 180 SKDEEHPGLN LDLCLSLPSN SAPADNRASS VDRTMVSVQG SDCSTLGTLQ YIVG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-27 | 15 | 118 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010028718.1 | 1e-81 | PREDICTED: myb-related protein 308 | ||||
Swissprot | P81393 | 2e-75 | MYB08_ANTMA; Myb-related protein 308 | ||||
Swissprot | Q9SZP1 | 2e-75 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | A0A3G6JFH7 | 1e-115 | A0A3G6JFH7_PINTA; Myb-related protein 4 | ||||
STRING | XP_010028718.1 | 4e-81 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 9e-78 | myb domain protein 4 |