PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MA_479649g0020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 153aa MW: 16053.9 Da PI: 7.5064 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11 | 0.0014 | 33 | 49 | 7 | 21 |
T..EEESSHHHHHHHHH CS zf-C2H2 7 g..ksFsrksnLkrHir 21 + ++Fsrk+nL rHi MA_479649g0020 33 SsgTTFSRKDNLFRHIT 49 4559***********96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 153 aa Download sequence Send to blast |
MYTCNRCQNK KFSVVADLKT HEKHCGRDKW LCSSGTTFSR KDNLFRHITI FQGHTPVSSP 60 AEMEGAALQD QVGNNGGAPN TGNSVSGFAN ACGNVSGILA GPEVVGLIHS NSNVPSIGPG 120 VNGTVLESSN GAVHSQIGLK NIGFSEDDKN LLL |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT104095 | 0.0 | BT104095.1 Picea glauca clone GQ02806_G04 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0A9JGB1 | 1e-27 | A0A0A9JGB1_ARUDO; Uncharacterized protein | ||||
TrEMBL | A0A0A9S670 | 1e-27 | A0A0A9S670_ARUDO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP830 | 16 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G34370.3 | 9e-29 | C2H2 family protein |