PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_47307g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family WRKY
Protein Properties Length: 397aa    MW: 43826.8 Da    PI: 6.1891
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_47307g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY955.2e-30180238259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    +Dg++WrKYGqK+ ++++ prsYYrC++a gCpvkk+v+r+aedp+vv++tYegeH+h+
  MA_47307g0010 180 SDGCRWRKYGQKSTRNNPRPRSYYRCAMAlGCPVKKQVQRCAEDPTVVITTYEGEHTHS 238
                    7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.9E-32168238IPR003657WRKY domain
SuperFamilySSF1182906.28E-27171239IPR003657WRKY domain
PROSITE profilePS5081127.76174240IPR003657WRKY domain
SMARTSM007744.9E-36179239IPR003657WRKY domain
PfamPF031061.0E-25181237IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MEDHRTKMTL LVTKINHMKE ENRNLKSMLE HMISDYDDLQ KQIRYQEKQH LTSIDRSQII  60
SPEHPIEDNF NFRILSPGSV NVDAGDAVSN QSNESSDSHE RVGEKDGRDD RFMDDQLLPS  120
NKRQINHLQL DQFQNGLSNS SMEESSNKKH QVPDGSGEQT AAAPKRIVSV RTISEASVIS  180
DGCRWRKYGQ KSTRNNPRPR SYYRCAMALG CPVKKQVQRC AEDPTVVITT YEGEHTHSLN  240
PLAMAAMHAG TSNQLIGEGM NGEKFVADSQ SIPLPTGCIA RISTSSSVPT IILDLTDNQP  300
NPALQMQPAH LAASGFQHFT PSSNDMDQAL DQNQLGNYSS SIQDSVASIR TDPNFSAALT  360
AAIADSMIKL GGPMQWVPKS LPATQCTNDS TREACGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-21170239876Probable WRKY transcription factor 4
2lex_A2e-21170239876Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1104113e-77BT110411.1 Picea glauca clone GQ03221_F16 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A482CVK91e-136A0A482CVK9_9SPER; WRKY164
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.16e-42WRKY family protein