PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_46529g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family WRKY
Protein Properties Length: 325aa    MW: 36901 Da    PI: 9.4081
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_46529g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.81e-28155212359
                    -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     g++W+KYGqK++k+++ prsYY+C+ a +Cpvkk+v+r+aedp++v++tYegeH+h+
  MA_46529g0010 155 NGCQWKKYGQKMIKNNPLPRSYYKCAWApRCPVKKQVQRCAEDPTIVITTYEGEHTHS 212
                    799***********************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-31140212IPR003657WRKY domain
SuperFamilySSF1182901.96E-26146213IPR003657WRKY domain
PROSITE profilePS5081125.637148214IPR003657WRKY domain
SMARTSM007741.3E-32153213IPR003657WRKY domain
PfamPF031065.3E-25154211IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MLVGEINLLK EENLKLKSML NRMSSKYNDL QMHIRSLVDL PKGVDGSQIF NPDHRGNDVL  60
YAMYSNAAIA PQYDQYWDSH ERGWEKEKKN AKFMNDQQLP SNKTTMNYFE SAQIENRIKS  120
SIDDSLCRHE KSLNKKSPKR TVSMPTRSEP SVRNNGCQWK KYGQKMIKNN PLPRSYYKCA  180
WAPRCPVKKQ VQRCAEDPTI VITTYEGEHT HSLSPLAMPA MHVGSSNRLI REGMMTENSV  240
ADNHFIPCIS RISTSSRFPT ITLDLTENRS NSGLQLQPPL LAPGSFHHSN PLPKKMGQDY  300
LSIMHDSVAS LREDLNFSAA LAGAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-201462131076Probable WRKY transcription factor 4
2lex_A3e-201462131076Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A482CVK91e-120A0A482CVK9_9SPER; WRKY164
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.12e-38WRKY family protein