PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_465203g0020
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 178aa    MW: 19744.4 Da    PI: 8.7237
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_465203g0020genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.92.8e-06761131455
                     HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++i ++++ L+ l+P +    +k  +Ka  Le+ ++Y++sLq
  MA_465203g0020  76 RKISDRMNILQNLIPGC----NKVTNKALLLEEIINYVQSLQ 113
                     589*************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.8862112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.24E-564116No hitNo description
SuperFamilySSF474591.7E-964120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-472118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-1077120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MHGTLIHKSK KDSCESGASK DHEEKSNTEL DVVRRDPPEL LSNVVTKETK ADSPKDYIHV  60
RARRGQATDR HSLAERKISD RMNILQNLIP GCNKVTNKAL LLEEIINYVQ SLQIQILSMK  120
LASTSYLRAF DDQITGHPFK ELLPAEATTG PMIASGIAPH SVDHTRTVAQ HRAPGTFG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010546046.11e-32PREDICTED: transcription factor bHLH79 isoform X2
RefseqXP_021978131.12e-32transcription factor bHLH62-like
TrEMBLD5AB254e-42D5AB25_PICSI; Uncharacterized protein
STRINGXP_010546046.15e-32(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.25e-33bHLH family protein