PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_460508g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 251aa MW: 28391.9 Da PI: 7.373 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.4 | 6.1e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEd +l d+++++G g+W++ ++ g+ R++k+c++rw +yl MA_460508g0010 14 KGPWNPEEDRKLMDYIQKYGFGNWRALPKQAGLMRCGKSCRLRWMNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.2 | 2.4e-15 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ ++eE++ +v+++++lG++ W+tIa++++ gRt++++k+ w++ MA_460508g0010 67 RGSLSPEEEQTIVRLHRLLGNR-WSTIASCLP-GRTDNEIKNIWNSN 111 7888******************.*********.*********99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.946 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.25E-30 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.0E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-24 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.77E-11 | 16 | 61 | No hit | No description |
SMART | SM00717 | 7.9E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 16.419 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.7E-13 | 67 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.9E-24 | 69 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.17E-10 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MGRAPCCDKM AVKKGPWNPE EDRKLMDYIQ KYGFGNWRAL PKQAGLMRCG KSCRLRWMNY 60 LRPDLKRGSL SPEEEQTIVR LHRLLGNRWS TIASCLPGRT DNEIKNIWNS NLKKRFTQSG 120 CGRNPLSAHS SSSTVPTIPV SVNNCLSKSL AMENSHCFLG SPNSTCSFSY SKESEPQFTA 180 DQIGIYGAEY DQPLWETISA RRHETDENKS AHDYINCLKK FLDIAEESSL QEHGSEDCDI 240 AGVSDHISED Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-30 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00249 | DAP | Transfer from AT1G79180 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020093513.1 | 3e-67 | myb-related protein Myb4-like | ||||
TrEMBL | A0A222UAC1 | 4e-71 | A0A222UAC1_GINBI; R2R3MYB17 | ||||
STRING | evm.model.supercontig_44.60 | 5e-64 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 9e-65 | myb domain protein 14 |