PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_45656g0030
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GRAS
Protein Properties Length: 736aa    MW: 82229.8 Da    PI: 5.4214
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_45656g0030genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS392.54.7e-1203617331374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    l+ lLl cA+av+++d++ a+++L++++++as++gd  qRla yf+ +L arl++s+ +l+  +++++ s  + +e l+a+kl+  ++P+ k+sh+
  MA_45656g0030 361 LRALLLVCAQAVATDDTRGANEILKQIRQHASSYGDGAQRLANYFADGLVARLTGSGGRLFTMVSSNSLS--SAAEILKAYKLYLVATPYKKISHF 454
                    5789*********************************************************988777776..599********************* PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                    ++ q++l+ +ege+r+Hi+Df+i +G+QWp+L+q La+Rp+gpp+lRiTg++ p++g   +e++eetg+rL+++A+++gvpfe+++ +a+++e+l+
  MA_45656g0030 455 LTYQTVLNVAEGETRLHIVDFGILYGFQWPSLIQCLANRPGGPPMLRITGIELPQPGfrPAERIEETGRRLEDYAKSFGVPFEYQA-IATKWENLD 549
                    ********************************************************9*****************************.7******** PP

           GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                    +eeL+++++E+l+Vn++++l +llde+v +es+r+ vL+ ++s++P+v++    +  +n++ F +rf eal +ysalfd+le+++pr++ er  +E
  MA_45656g0030 550 VEELNLRSDEVLVVNCMYRLRHLLDETVVVESPRNVVLNKIRSMNPRVFIQGVVNGAYNAPFFITRFREALFHYSALFDALETTVPRDHPERLLIE 645
                    ************************************************************************************************ PP

           GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    +e+lgrei nvvaceg er er et+++W+ r ++aG+ ++pl+ ++ ++a+  +++++ + + v+e+ ++++lgWk+r L+ +S Wr
  MA_45656g0030 646 KEMLGREILNVVACEGLERLERPETYKQWQVRTQRAGYVQLPLNRTILSKARDKVKTFYHKDFGVDEDGNWMLLGWKGRILYGLSTWR 733
                    ***********************************************************889*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098571.218335713IPR005202Transcription factor GRAS
PfamPF035141.6E-117361733IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MANEKNGVFY SNNVNGFSNN IGLQRSWLQQ EAAMPAAQFQ GSLSSEKTTS STDGESEDKE  60
LYSDVVLKYI SDMLMDENME ERKCMYQECS ALQATVKPFY DILGENYPPQ GICGGGKVGQ  120
NQKELLNYSK DDVQYKIEDS SWIGEFFNSQ IPAGFDSPLS GNLSAGYSSQ YSFSSSGSST  180
VIDGLDSPIY ELSLSEIFSE DKQGLGVGEF EEASQVVTKK NIGFSVENGG WVLRAPKKEA  240
DLELKVGKRV DAIGVGFQMS AAHSDDENGP KRQKDPHRED LDLEDRQSNK LSAVYPDNAI  300
RTESFDEVLL CGGNNGKKFV DMQLEVLHNG VQKSIQSGSL KGSQGTKTAG KKQAKKEVVD  360
LRALLLVCAQ AVATDDTRGA NEILKQIRQH ASSYGDGAQR LANYFADGLV ARLTGSGGRL  420
FTMVSSNSLS SAAEILKAYK LYLVATPYKK ISHFLTYQTV LNVAEGETRL HIVDFGILYG  480
FQWPSLIQCL ANRPGGPPML RITGIELPQP GFRPAERIEE TGRRLEDYAK SFGVPFEYQA  540
IATKWENLDV EELNLRSDEV LVVNCMYRLR HLLDETVVVE SPRNVVLNKI RSMNPRVFIQ  600
GVVNGAYNAP FFITRFREAL FHYSALFDAL ETTVPRDHPE RLLIEKEMLG REILNVVACE  660
GLERLERPET YKQWQVRTQR AGYVQLPLNR TILSKARDKV KTFYHKDFGV DEDGNWMLLG  720
WKGRILYGLS TWRPSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-5736873426380Protein SCARECROW
5b3h_A9e-5836873425379Protein SCARECROW
5b3h_D9e-5836873425379Protein SCARECROW
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ6835670.0DQ683567.1 Pinus radiata SCARECROW-like protein 1 (SCL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010262535.10.0PREDICTED: scarecrow-like protein 14
TrEMBLA3E2G20.0A3E2G2_PINRA; SCARECROW-like protein 1
STRINGXP_010262535.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP26615129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-175SCARECROW-like 14