PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_45656g0030 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | GRAS | ||||||||
Protein Properties | Length: 736aa MW: 82229.8 Da PI: 5.4214 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 392.5 | 4.7e-120 | 361 | 733 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 l+ lLl cA+av+++d++ a+++L++++++as++gd qRla yf+ +L arl++s+ +l+ +++++ s + +e l+a+kl+ ++P+ k+sh+ MA_45656g0030 361 LRALLLVCAQAVATDDTRGANEILKQIRQHASSYGDGAQRLANYFADGLVARLTGSGGRLFTMVSSNSLS--SAAEILKAYKLYLVATPYKKISHF 454 5789*********************************************************988777776..599********************* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190 ++ q++l+ +ege+r+Hi+Df+i +G+QWp+L+q La+Rp+gpp+lRiTg++ p++g +e++eetg+rL+++A+++gvpfe+++ +a+++e+l+ MA_45656g0030 455 LTYQTVLNVAEGETRLHIVDFGILYGFQWPSLIQCLANRPGGPPMLRITGIELPQPGfrPAERIEETGRRLEDYAKSFGVPFEYQA-IATKWENLD 549 ********************************************************9*****************************.7******** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286 +eeL+++++E+l+Vn++++l +llde+v +es+r+ vL+ ++s++P+v++ + +n++ F +rf eal +ysalfd+le+++pr++ er +E MA_45656g0030 550 VEELNLRSDEVLVVNCMYRLRHLLDETVVVESPRNVVLNKIRSMNPRVFIQGVVNGAYNAPFFITRFREALFHYSALFDALETTVPRDHPERLLIE 645 ************************************************************************************************ PP GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +e+lgrei nvvaceg er er et+++W+ r ++aG+ ++pl+ ++ ++a+ +++++ + + v+e+ ++++lgWk+r L+ +S Wr MA_45656g0030 646 KEMLGREILNVVACEGLERLERPETYKQWQVRTQRAGYVQLPLNRTILSKARDKVKTFYHKDFGVDEDGNWMLLGWKGRILYGLSTWR 733 ***********************************************************889*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 71.218 | 335 | 713 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.6E-117 | 361 | 733 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 736 aa Download sequence Send to blast |
MANEKNGVFY SNNVNGFSNN IGLQRSWLQQ EAAMPAAQFQ GSLSSEKTTS STDGESEDKE 60 LYSDVVLKYI SDMLMDENME ERKCMYQECS ALQATVKPFY DILGENYPPQ GICGGGKVGQ 120 NQKELLNYSK DDVQYKIEDS SWIGEFFNSQ IPAGFDSPLS GNLSAGYSSQ YSFSSSGSST 180 VIDGLDSPIY ELSLSEIFSE DKQGLGVGEF EEASQVVTKK NIGFSVENGG WVLRAPKKEA 240 DLELKVGKRV DAIGVGFQMS AAHSDDENGP KRQKDPHRED LDLEDRQSNK LSAVYPDNAI 300 RTESFDEVLL CGGNNGKKFV DMQLEVLHNG VQKSIQSGSL KGSQGTKTAG KKQAKKEVVD 360 LRALLLVCAQ AVATDDTRGA NEILKQIRQH ASSYGDGAQR LANYFADGLV ARLTGSGGRL 420 FTMVSSNSLS SAAEILKAYK LYLVATPYKK ISHFLTYQTV LNVAEGETRL HIVDFGILYG 480 FQWPSLIQCL ANRPGGPPML RITGIELPQP GFRPAERIEE TGRRLEDYAK SFGVPFEYQA 540 IATKWENLDV EELNLRSDEV LVVNCMYRLR HLLDETVVVE SPRNVVLNKI RSMNPRVFIQ 600 GVVNGAYNAP FFITRFREAL FHYSALFDAL ETTVPRDHPE RLLIEKEMLG REILNVVACE 660 GLERLERPET YKQWQVRTQR AGYVQLPLNR TILSKARDKV KTFYHKDFGV DEDGNWMLLG 720 WKGRILYGLS TWRPSA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-57 | 368 | 734 | 26 | 380 | Protein SCARECROW |
5b3h_A | 9e-58 | 368 | 734 | 25 | 379 | Protein SCARECROW |
5b3h_D | 9e-58 | 368 | 734 | 25 | 379 | Protein SCARECROW |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ683567 | 0.0 | DQ683567.1 Pinus radiata SCARECROW-like protein 1 (SCL1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010262535.1 | 0.0 | PREDICTED: scarecrow-like protein 14 | ||||
TrEMBL | A3E2G2 | 0.0 | A3E2G2_PINRA; SCARECROW-like protein 1 | ||||
STRING | XP_010262535.1 | 0.0 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP266 | 15 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-175 | SCARECROW-like 14 |